Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00813
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19600.1 68417.m02880 cyclin family protein similar to cyclin...    29   3.3  
At4g25240.1 68417.m03632 multi-copper oxidase type I family prot...    27   10.0 
At4g23250.1 68417.m03352 protein kinase family protein contains ...    27   10.0 

>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
           T2a [Homo sapiens] GI:2981198; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 541

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 446 KQKESVRRGTHQRKNKIVIFINSEHFHIYLPFKPSLDFHKKFKTKISQIDSAVLEF*RD 622
           +QKE +  G      KIV+      F++Y P+KP ++  KKFK   + +      F  D
Sbjct: 153 QQKELILNG-----EKIVLSTLGFDFNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVND 206


>At4g25240.1 68417.m03632 multi-copper oxidase type I family protein
           pollen-specific protein precursor -Nicotiana tabacum,
           PID:g19902; contains Pfam profile: PF00394 Multicopper
           oxidase
          Length = 589

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 502 NNNFVFPLMCPPSDGFLLFVLSLFYTK 422
           NN  + P+  P  DG L+F++  +YT+
Sbjct: 146 NNRDIIPIPFPQPDGELIFIIGDWYTQ 172


>At4g23250.1 68417.m03352 protein kinase family protein contains
          Pfam domain PF00069: Protein kinase domain
          Length = 998

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -2

Query: 60 ILLCFFFSMLFFNVILVS 7
          I+LCFFF +L F VI VS
Sbjct: 8  IILCFFFFILSFRVISVS 25


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,614,735
Number of Sequences: 28952
Number of extensions: 256976
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)