Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00812
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    49   8e-07
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    29   0.93 
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    28   1.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.8  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   6.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   8.7  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   8.7  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 22/42 (52%), Positives = 27/42 (64%)
 Frame = +2

Query: 128 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV 253
           K+ ID T    D I DV  FEKYL + +KV+GKT NL + VV
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVV 52


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 342 TDFILVSMHPILLFSCTNCGDSDFRLIPGA 253
           T  +L+SMH +LL S  + GDS   ++P A
Sbjct: 514 TSTVLISMHNLLLASILSPGDSQAVIVPHA 543


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 112 LDAFAADFATLHSFFASLLMQLGFFS 35
           +D +  DFAT H+ + + L  +GF S
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/90 (22%), Positives = 40/90 (44%)
 Frame = +2

Query: 128  KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVAPGIRRKSLSPQLVQLNS 307
            K   DC +  + ++  + N +K + +HV  E K + L        +  K LS  L  L S
Sbjct: 819  KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSELKE------VNGK-LSLDLKNLRS 871

Query: 308  KMGCILTNIKSVVTLLLYLRIDHNLIRCHS 397
             +   +++   ++T L  L  +++ +   S
Sbjct: 872  SLNVAISDNDQILTQLAELSKNYDSLEQES 901


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +1

Query: 580 NFWYRFYYNFAF---LMTNTTCKFVGYKGAISSFLLL 681
           +FW R Y+ F F    +T+     V + G  S F +L
Sbjct: 6   SFWIRLYFTFRFFCYFLTSVVASDVSFLGDFSGFNVL 42


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 173  DVGNFEKYLKEHVKVEGKTNNLSNH 247
            + GN +KY + ++KV GK ++   H
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTH 979


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
 Frame = +2

Query: 128 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVAPGIRRK-----SLSPQL 292
           K ++D  H  +   L   N +  +KE  KV+G+ + L   +   G+ +K     SL+  L
Sbjct: 153 KLSVDNAHLIKQLDLLSSNMKTLMKEKTKVQGQRDLLEQRL--QGLMKKLTEVESLTVSL 210

Query: 293 VQLNSKMGCILTNIK 337
               +K+   LTN++
Sbjct: 211 NDEKNKLTLELTNLR 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,973
Number of Sequences: 5004
Number of extensions: 51815
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)