Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00812
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1662 + 28447419-28447666,28448429-28448573                       46   2e-05
03_02_0963 - 12769715-12769859,12770639-12770889                       44   1e-04
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    30   2.2  
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105...    28   6.9  

>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = +2

Query: 122 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHV 250
           ++ F IDC+ P ED I+++ + EK+L+E +KV  GK  NL + V
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV 63


>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 122 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHV 250
           ++ F IDC  P +D I+++ + EK+L+E +KV  GK  NL   V
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESV 64


>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
            26699321-26699416
          Length = 1515

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
 Frame = +2

Query: 134  TIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVAPGIRRKS-LSPQL----VQ 298
            T+     +EDSI ++ +    LKE + V+ ++N+  N  +   I + S L+ +L     +
Sbjct: 1104 TLTQLEKSEDSIKNLESELAQLKEELSVQMESNSSLNKQLEEAILKVSNLTEELETVQAE 1163

Query: 299  LNSKMGCILTNIKSVVTLLLYLRIDHNLIRCHSMFIS 409
              SK+  + TN K +V  ++ L    N +  H   I+
Sbjct: 1164 TASKINDMETNTKDLVNTIVLLSSQKNKVEEHMKIIT 1200


>02_05_0061 +
           25506648-25509399,25509564-25509901,25510392-25510593,
           25510779-25510854,25512036-25512294
          Length = 1208

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 230 NNLSNHVVAPGIRRKSLSPQLVQLNSKMGCILTNIKSVVTLLLYLRIDHN 379
           NN S  +        SLS      N+ +G I T++ ++ TL +YL I +N
Sbjct: 481 NNFSGSIPITVGNMVSLSSLRFSFNNFIGTIPTSLFNITTLSIYLDISYN 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,367
Number of Sequences: 37544
Number of extensions: 281694
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)