Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00812
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15)           31   0.75 
SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         28   9.2  

>SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15)
          Length = 711

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 137 IDCTHPAEDSILDVGNFEKYL--KEHVKVEGKTNNLSNHVV 253
           + C H +E S L   + + Y   K   KVE   NNLSNHV+
Sbjct: 376 LPCVHSSETSELFAQDLKMYYVQKAFSKVEPMLNNLSNHVI 416


>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 366  RKYSNKVTTDFILVSMHPILLFSCT 292
            R  S+  +TD ++ S+HP+L FS T
Sbjct: 1628 RSESSSSSTDVLMASIHPLLSFSST 1652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,026,508
Number of Sequences: 59808
Number of extensions: 362037
Number of successful extensions: 698
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)