Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00812
(746 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi... 49 3e-06
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo... 48 9e-06
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id... 48 9e-06
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id... 48 9e-06
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 5.7
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 27 10.0
At1g10740.2 68414.m01226 expressed protein 27 10.0
At1g10740.1 68414.m01225 expressed protein 27 10.0
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 27 10.0
>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
to ribosomal protein L22 GI:710294 from [Rattus
norvegicus]
Length = 127
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +2
Query: 125 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHV 250
+ F IDC+ P +D+IL++ EK+L+E +KV GK L N V
Sbjct: 18 VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSV 59
>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
ribosomal protein L22 (cytosolic), Rattus norvegicus,
PIR:S52084
Length = 124
Score = 47.6 bits (108), Expect = 9e-06
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +2
Query: 125 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHV 250
+ FTIDC+ P +D I+++ + EK+L+E +KV GK L + V
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSV 57
>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 47.6 bits (108), Expect = 9e-06
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +2
Query: 125 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHV 250
+ FTIDC+ P +D I+++ + EK+L+E +KV GK L + V
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSV 57
>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 47.6 bits (108), Expect = 9e-06
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +2
Query: 125 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHV 250
+ FTIDC+ P +D I+++ + EK+L+E +KV GK L + V
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSV 57
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 143 CTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV 253
C P E++++D+ +++K H +EG T+ LSN ++
Sbjct: 402 CDFPLEETVIDL----EHMKIHSSLEGFTSALSNTII 434
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 228 VLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 109
+L S YF PT +IL+ A QS+++ ++ +L
Sbjct: 560 MLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKL 599
>At1g10740.2 68414.m01226 expressed protein
Length = 406
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +1
Query: 526 CFMKITHKKILL*ALITINFWYRFYYNFAFLMTNTTCKFVGYKGAISSFL 675
C +++ +++ + I+ W + YYNF F N + K G +G + +
Sbjct: 227 CLLQLCRIGVIMYDWLDIS-WLKTYYNFGFDHFNISWKKTGVRGLVDCLM 275
>At1g10740.1 68414.m01225 expressed protein
Length = 473
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +1
Query: 526 CFMKITHKKILL*ALITINFWYRFYYNFAFLMTNTTCKFVGYKGAISSFL 675
C +++ +++ + I+ W + YYNF F N + K G +G + +
Sbjct: 227 CLLQLCRIGVIMYDWLDIS-WLKTYYNFGFDHFNISWKKTGVRGLVDCLM 275
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 240 LRLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 109
L L +L S +F P +IL+ QS+V+ + FRL
Sbjct: 1022 LFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRL 1065
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,873,263
Number of Sequences: 28952
Number of extensions: 247569
Number of successful extensions: 476
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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