Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00811
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 35 0.016
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 32 0.085
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.26
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 31 0.26
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 30 0.34
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 30 0.45
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.79
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.4
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 28 1.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 28 1.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 28 1.8
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 2.4
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 27 3.2
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 3.2
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 27 3.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.2
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 5.6
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 5.6
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 5.6
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 26 5.6
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 5.6
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 5.6
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 5.6
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 7.4
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 7.4
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 26 7.4
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 25 9.7
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 9.7
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 25 9.7
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 9.7
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 25 9.7
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 9.7
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 9.7
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.7 bits (76), Expect = 0.016
Identities = 17/84 (20%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +1
Query: 40 ATMADAAVDKKEVAPEEVTSTEPKESPV---KKSPAKKVEAAESNGKENGTDEAPEDSPA 210
++ D + K + + +S EP + V KKS K+ ++ES + + ++ S +
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSES 103
Query: 211 ENGDAEESNDASENGMPQKRKRLV 282
E+ +E + +SE+ + + ++
Sbjct: 104 ESSSSESESSSSESSSSESEEEVI 127
Score = 29.5 bits (63), Expect = 0.60
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 64 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND- 240
+KKE + + + + ES + S ++ E E K T+E E S + D+E S+D
Sbjct: 158 EKKESSSDSSSESSSSESESESSSSESEEEEEVVEK---TEEKKEGSSESSSDSESSSDS 214
Query: 241 ASENG 255
+SE+G
Sbjct: 215 SSESG 219
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/77 (19%), Positives = 37/77 (48%)
Frame = +1
Query: 49 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAE 228
++++ + E E V TE K+ +S + E++ + E+G ++ DS +E+ +
Sbjct: 177 SESSSSESEEEEEVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESESSSED 235
Query: 229 ESNDASENGMPQKRKRL 279
E +E ++ ++
Sbjct: 236 EKKRKAEPASEERPAKI 252
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 32.3 bits (70), Expect = 0.085
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 67 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP-AENGDAEE 231
K+E P E + +P SPV S K E +E K +DEAP+ +P AE+ EE
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAPLAESKKVEE 539
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 82 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEES 234
PE ++PKES ++ P+K+ E + + +E + +N EE+
Sbjct: 430 PEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEET 480
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 115 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDAS 246
+P+K+ PAK ++ + A SPA NG N+AS
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEAS 156
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 30.7 bits (66), Expect = 0.26
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +1
Query: 85 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGMPQ 264
+E + KES K++PA+K + + ENGT+E + PA+ + D E G
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRAT--ENGTEEGKK--PAKR-TRKRKEDGEEGG--- 104
Query: 265 KRKR 276
KRKR
Sbjct: 105 KRKR 108
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +1
Query: 79 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGM 258
AP E S E K++P +K+ K+ A NG E G A + D EE N
Sbjct: 57 APSEKESLE-KQAPARKTKGKR---ATENGTEEGKKPAKRTRKRKE-DGEEGGKRKRNQD 111
Query: 259 P 261
P
Sbjct: 112 P 112
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 30.3 bits (65), Expect = 0.34
Identities = 14/64 (21%), Positives = 29/64 (45%)
Frame = +1
Query: 91 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGMPQKR 270
+ +EP + K+ K + +E+ + G D+ E+ ++ D +E D E+ R
Sbjct: 169 IQPSEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDEDEDEDNNNNNR 228
Query: 271 KRLV 282
L+
Sbjct: 229 WLLI 232
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 29.9 bits (64), Expect = 0.45
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 88 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGMPQ 264
EV++ EP+ PVK+ V ++ G+ + TD +P E + S + E G Q
Sbjct: 389 EVSANEPQPRPVKED----VPKSQVGGETDTTDVINNSTPKEETEESPSTELPETGKEQ 443
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.1 bits (62), Expect = 0.79
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 73 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEE 231
++ PE+ + + PVKK P+KK + A++N E DE + E D+E+
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE-DSEK 108
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 127 KSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGMPQKRK 273
K P+ K + S+ +NG+D DS + N SN +EN Q+RK
Sbjct: 963 KDPSPKSASESSSFYQNGSDIDDNDSNSSN----TSNHTTENANAQQRK 1007
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -1
Query: 694 KQHTTLNLM*SVHCDAFSHWQLHT*IYNLQVLLQVKFNTQCIYYYINLNLNQTQKSSTLH 515
K++ L++ S D W + + + V+L K+ + +Y +LNL K S
Sbjct: 136 KKNPILDIKESQFRDPKVFWHEESRAWIMVVVLAQKYK---VLFYHSLNLRDWVKLSEFG 192
Query: 514 S---MGYQYGCNTFV 479
S +GYQY C FV
Sbjct: 193 SAGVLGYQYECPDFV 207
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 70 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN-GDAEESNDA 243
++V ++TS EPK + KSP +K + ++ T++ DS +N ++S DA
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKSTDA 1030
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 148 EAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 252
E++E + ++N TDEA ED+ + D + S +
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSH 389
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = +1
Query: 94 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 252
+ +E + S + +ES G+D + S +E+ + E ND+S +
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSS 185
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = +1
Query: 94 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 252
+ +E + S + +ES G+D + S +E+ + E ND+S +
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSS 239
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/56 (16%), Positives = 31/56 (55%)
Frame = +1
Query: 85 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 252
E +S+E +S S ++ +++ + + + ++ +DS +++ D+E + + ++
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDS 299
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 103 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDA-SENGMPQKRK 273
+P +PVKKS K A + N + + S A + + ++ A G P++RK
Sbjct: 195 QPAAAPVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPAVLPEGKPRRRK 252
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +1
Query: 97 STEPKESPVKKSPAKKVE-----AAESNGKENGTDEAPEDSPAENGDAEESN 237
S P++SPV+ V+ +ESN K +GT+ + +P NG+ E +N
Sbjct: 175 SFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGNEEVNN 225
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +1
Query: 85 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE----NGDAEESNDASEN 252
EEV +K+ A + KEN D+ P + AE NG EE SE
Sbjct: 501 EEVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPSPAAAEDIGTNGAIEEIPQVSEV 560
Query: 253 GMPQK 267
P+K
Sbjct: 561 LEPEK 565
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +1
Query: 109 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN---DASENGMPQ 264
+E +S + EA E NG + S EN D+EE N D N +P+
Sbjct: 3939 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPE 3993
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 5.6
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 17/88 (19%)
Frame = +1
Query: 82 PEEVTSTEPKESPVKKSPA---KKVEAAESN-----------GKEN---GTDEAPEDSPA 210
P ++ S+ PK+ V++SPA + + A + N G++N T P S
Sbjct: 188 PSKIPSSTPKDDNVQESPAFPDENITALQKNVANFTSIKDSGGRDNLYIQTISKPRRSYV 247
Query: 211 ENGDAEESNDASENGMPQKRKRLV*RGN 294
+N +E++ S+ ++ K+ + +GN
Sbjct: 248 QNNKSEQTIKPSKQNKQKEEKKTISQGN 275
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 91 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 252
V ++E ES + S ++ E ES +DE+ +S +E+ EES E+
Sbjct: 75 VAASEDSESDSESS--EEEEETESEEDSEVSDESESESESESESEEESESEEES 126
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 154 AESNGKENGTDEAPEDSPAENGDAEESNDASEN 252
+ES ++ DE E+ EN D + D +EN
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENEN 273
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 5.6
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +1
Query: 34 YLATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAE--SNGKEN-GTDEAPEDS 204
YL A + KE + + E K++ K++ A + + SNG +N ++ E +
Sbjct: 72 YLLQKASSKAGAKEKQNTD-SQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEPA 130
Query: 205 PAENGDAEESNDASENGMPQKRK 273
NG+ + N + + P+K+K
Sbjct: 131 FQTNGEVKMKNSSESDNQPEKKK 153
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 76 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 237
VAP +TS + V KS VE+ +++ T PED P+ ++N
Sbjct: 288 VAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPSPMDTLSQAN 340
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +1
Query: 55 AAVDKKEVAPEEVTSTEPKESPV----KKSPAKKVEAAESNGKENGTDEAPEDSPAENGD 222
A VD++E+ EE + PV K S +K S K + EDS GD
Sbjct: 75 AQVDEEELEEEEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENLEGD 134
Query: 223 AEESN 237
E+ +
Sbjct: 135 EEDGS 139
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 157 ESNGKENGTDEAPEDSPAENGDAEESNDASENGMP 261
E+N + + T+EA S E D E+S+ +++ +P
Sbjct: 89 ENNNENDTTEEAETSSGNEAADDEDSSSDAQSSVP 123
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +1
Query: 91 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDA 243
+ ++ K SPV + A +N + + +SP + EE+N A
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQA 577
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 58 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED 201
++D+ +P ++S K SP K+ +K ++A + TDE P D
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSD 633
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 605 LQIVNLCM*LPVTECIAVN*SHKIECCMLFYVSLSFS 715
LQ + L M L + C+ + + + CC+ F VSLSF+
Sbjct: 74 LQKLRLKMDLRIIPCLWI--LYFLSCCLRFTVSLSFT 108
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 226 EESNDASENGMPQKRKRLV*RGNLWLLM 309
E+S DASE +K +L+ RG W+L+
Sbjct: 98 EQSGDASERVHARKVLKLLRRGKHWVLV 125
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +1
Query: 82 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE---NGDAEESND-ASE 249
P E +TE + + +S + ++ S + D DSP + N + +D SE
Sbjct: 351 PSENDTTESENDTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESE 410
Query: 250 NG 255
NG
Sbjct: 411 NG 412
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 508 PYYEGLSSFVSDLSLGLYNNKYIVY 582
P E + + DLS GLY + Y+ +
Sbjct: 97 PTQENIELIIEDLSKGLYESAYVCF 121
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 109 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND 240
KE ++ AKK+ ES K+ A + + + A+E ND
Sbjct: 41 KEKAKARAEAKKLAKKESKAKQESKVAAYDTGNSSDNIADEEND 84
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/60 (20%), Positives = 29/60 (48%)
Frame = +1
Query: 94 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGMPQKRK 273
++ EP+ + + + ++ E E +EN D+ ++ +N E E+ + ++RK
Sbjct: 297 STAEPRAAGEESASEEEEEEEEEEEEENEADDETRENKRQNRLVREFISELESSIQKRRK 356
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 103 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 216
E +ESP+K P KK + E T + SP E+
Sbjct: 892 ETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVES 929
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 52 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 210
+ A KK A E + + + K++ AK++EAA+ N + P+D+PA
Sbjct: 80 EQAAKKKAKAAEAEAAAAARAAAAKEAEAKRLEAAK-----NIVLKEPKDAPA 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,069
Number of Sequences: 5004
Number of extensions: 59390
Number of successful extensions: 249
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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