Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00810
         (775 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9MGB8 Cluster: Ribosomal protein S2; n=1; Chrysodidymu...    36   0.85 
UniRef50_Q8IDE5 Cluster: Putative uncharacterized protein MAL13P...    36   1.1  
UniRef50_P09724 Cluster: Transmembrane protein HWLF3; n=5; Cytom...    34   3.4  
UniRef50_Q6LFI3 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  
UniRef50_A0BPR8 Cluster: Chromosome undetermined scaffold_12, wh...    33   7.9  

>UniRef50_Q9MGB8 Cluster: Ribosomal protein S2; n=1; Chrysodidymus
           synuroideus|Rep: Ribosomal protein S2 - Chrysodidymus
           synuroideus
          Length = 150

 Score = 36.3 bits (80), Expect = 0.85
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 306 KSNKSTYLIKEYNLTIHIDTKQQQYIRSRPPYVYANLI-RNTF*LTLYVIPK 154
           KS K    +K+ NL I+I  K +QYI     Y+  NLI +N F +  Y+ PK
Sbjct: 35  KSIKLFLRLKKLNLPIYIVLKNEQYIYLLKKYISNNLIFKNIFIINKYIAPK 86


>UniRef50_Q8IDE5 Cluster: Putative uncharacterized protein
           MAL13P1.275; n=4; Plasmodium|Rep: Putative
           uncharacterized protein MAL13P1.275 - Plasmodium
           falciparum (isolate 3D7)
          Length = 1288

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 25/105 (23%), Positives = 49/105 (46%)
 Frame = -3

Query: 584 EQSDSKRKTMSELISFGIEFFRRNHNITYIVVPSAATIKYYHGLQSFYVQKHIAGMHASN 405
           +Q   +++ ++E ++   +    N N+T+I   +   +  Y+   S++   +    + +N
Sbjct: 395 DQQQEQKENINEELNINEDGSNINKNMTFIKKDNYNKMGKYNNRNSYFNNNN---NNKNN 451

Query: 404 RNGARQTH*TNNSQNIKFRNLIF*LNAIYKLYRNQTKVHI**RNI 270
            N +   +  NN+ N  F N+ F LN     Y N  K +I  RNI
Sbjct: 452 NNNSSNNN--NNNNNKPFNNMTFSLNKYLNPYVNYNKTNINSRNI 494


>UniRef50_P09724 Cluster: Transmembrane protein HWLF3; n=5;
           Cytomegalovirus|Rep: Transmembrane protein HWLF3 - Human
           cytomegalovirus (strain AD169) (HHV-5) (Human
           herpesvirus 5)
          Length = 342

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +2

Query: 215 GGRERMYCCCFVSICIVKLYSFIKYVLLFDFDIIYKSRLVKILSYEILYFVNCLFSESV 391
           GGR+R    C   + +V L SF+   LL D D + K  +V + ++ I +F+  L  +S+
Sbjct: 224 GGRDRRRWKCISCVYVVMLLSFLTLALLSDADWLQKI-VVTLCAFSISFFLGILAYDSL 281


>UniRef50_Q6LFI3 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1948

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +2

Query: 266  KLYSFIKYVLLFDFDIIYKSRLVKILSYEILYFVNCLFSESVSRH 400
            K Y  I Y+LL++F  ++K   +K   Y++LY +  + +E  +++
Sbjct: 1227 KYYKIIYYLLLYNFKYVFKKLKLKYSIYDLLYNLKDIHNEKQTKY 1271


>UniRef50_A0BPR8 Cluster: Chromosome undetermined scaffold_12, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_12,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 576

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 230 MYCCCFV-SICIVKLYSFIKYVLLFDFDIIYKSRLVKILSYEILYFVNCL 376
           +YCC FV SI    + S + +V+LF    + KSR  K++ Y   +F++ L
Sbjct: 144 IYCCAFVVSIIAGLMQSLLLFVMLFYLSNLAKSR-EKVIYYGSFFFIHSL 192


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,834,892
Number of Sequences: 1657284
Number of extensions: 14127579
Number of successful extensions: 29730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29722
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)