Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00810
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    30   0.32 
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    27   3.0  
SPAC167.04 |pam17||presequence translocase-associated motor subu...    26   5.2  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   6.9  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   9.1  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -3

Query: 545 ISFGIEFFRRNHNITYIVVPSAATIKYYHGLQSFYVQKHIAGMHASNR 402
           I FG+E       ITY + P A +I YY   Q FYV  + A  +   R
Sbjct: 462 IEFGLERLLLGTMITYFLFPGAPSI-YYGDEQGFYVLDNTANNYLYGR 508


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 536 QMKLIRSLFFVYCLIVRLKSVYVFK 610
           Q+  +R  FF++C I+R+    VF+
Sbjct: 3   QLLFLRRFFFLFCFIIRISCTGVFE 27


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 238 TIHSLPTSLRLC*LNKKYFLTYIIRDTENVC-IDLFLIILL 119
           T+ S+PT+L    L   YFLT  +  T  +  +DLF + ++
Sbjct: 63  TLTSIPTALTGLGLGSAYFLTRTVDPTMTIMGLDLFTLYVI 103


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 320 KSRLVKILSYEILYFVNCLFS 382
           +S +  ++SY +LYFVN L S
Sbjct: 38  QSNVGAVISYAVLYFVNSLLS 58


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 618 ISSILKE*TNSPLLIKHTNDGVQTI*YAK 704
           ++S+L +  +SPL+   T DGV ++ Y K
Sbjct: 120 LNSLLSDPKSSPLMQSSTLDGVSSVCYKK 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,017
Number of Sequences: 5004
Number of extensions: 66358
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)