Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00810
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)                       31   1.4  
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   28   7.3  

>SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)
          Length = 125

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = -3

Query: 512 HNITYI---VVPSAATIKYYHGLQSFY--VQKHIAGMHASNRNGARQ 387
           HNIT+    ++P  A   + H LQS+Y  + KH+  +H   +N  RQ
Sbjct: 28  HNITWPYTGIIPRDAQASFQHLLQSYYKTLAKHLLQVHKDLQNRERQ 74


>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -2

Query: 252 DTKQQQYIRSRPPYVYANLIRNTF*LTLYVIPKTSVSICS**YCLNYDFIKPQGH 88
           + +Q Q   S+PPY YANLI  TF +      K ++S      C ++ + K  G+
Sbjct: 63  EARQHQTKESKPPYSYANLI--TFAINSSPEKKMTLSEIYQWICDHFPYYKEAGN 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,497,037
Number of Sequences: 59808
Number of extensions: 444163
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)