Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00810
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 222 RPPYVYANLIRNT 184
           RPP+ YA+LIR +
Sbjct: 504 RPPFTYASLIRQS 516


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 514 FLLKNSIPNEINSLIVFRLLSDCSF 588
           F  +++  N +N+ + F+L++DC F
Sbjct: 48  FYRQDTKNNLLNAYVRFKLVTDCIF 72


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 273 YNLTIHIDTKQQQYIRSRPPYVYANLI 193
           Y L   +    QQY +S P Y Y +LI
Sbjct: 435 YQLYKKVMNLYQQYQQSLPVYQYNDLI 461


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 299 FDFDIIYKSRLVKILSY-EILYFVNCLFSESVSRHFCLMHA 418
           +DF +I  ++++K+ +      +   ++  S+SRH+ ++HA
Sbjct: 217 WDFKVIKATKVLKMYACCPNDTYPMIVYEFSISRHYGILHA 257


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 171 LYVIPKTSVSICS**YCLNYDFIKPQGHTIS 79
           ++ +   S+SIC     LN  F  PQ H ++
Sbjct: 312 IFAMILVSISICVTVVVLNVHFRSPQTHKMA 342


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 171 LYVIPKTSVSICS**YCLNYDFIKPQGHTIS 79
           ++ +   S+SIC     LN  F  PQ H ++
Sbjct: 312 IFAMILVSISICVTVVVLNVHFRSPQTHKMA 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,133
Number of Sequences: 438
Number of extensions: 4987
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)