Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00809
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...   136   2e-33
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   3.7  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   3.7  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   8.6  

>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score =  136 bits (330), Expect = 2e-33
 Identities = 59/85 (69%), Positives = 68/85 (80%)
 Frame = +2

Query: 2   SIEPWLQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPA 181
           SIEPWLQ +N     K+ +  Q   DR KLDGLYEC+LCACCSTSCPSYWWN ++YLGPA
Sbjct: 133 SIEPWLQNDNIP---KDKEFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPA 189

Query: 182 VLMQAYRWIIDSRDEATEKRLSKLR 256
           VLMQAYRWIIDSRD+AT KRL  ++
Sbjct: 190 VLMQAYRWIIDSRDQATAKRLDVMQ 214



 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = +1

Query: 253 QDTYSVYRCHTIMNCTRTCPKGLNPGRAIAQIKTLLS 363
           Q++ SVYRCHTIMNC RTCPKGLNPG AIA++K L++
Sbjct: 214 QNSMSVYRCHTIMNCARTCPKGLNPGLAIAKVKALMA 250


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 116 CACCSTSCPSYWWNGDKYLGPAVLMQAYRWI 208
           C    T+  + +WN DKY+    +    +WI
Sbjct: 355 CDAAGTNFANCYWNVDKYIRARTVYDRLKWI 385


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 110 VLCACCSTSCPSYWWNGDK 166
           V+C C ++SC  Y WN ++
Sbjct: 112 VVCGCSNSSCIVYSWNAEQ 130


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +2

Query: 53  TQLLQDVEDRVKLDG---LYECVLCACCSTSCPS 145
           T    D + RV+ D    +YEC     CS  CP+
Sbjct: 286 THFAYDAQGRVRADTGAVIYECNSFCSCSMECPN 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,494
Number of Sequences: 5004
Number of extensions: 62659
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)