Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00809
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438    118   6e-27
05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419...    29   2.9  
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    29   5.1  
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589...    28   6.8  

>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
          Length = 617

 Score =  118 bits (283), Expect = 6e-27
 Identities = 47/84 (55%), Positives = 63/84 (75%)
 Frame = +2

Query: 2   SIEPWLQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPA 181
           S+EPWL+R+ +  K + T+  Q  E+R +LDGLYEC+LCACCS +CPSYWWN + +LGPA
Sbjct: 493 SVEPWLKRKTKT-KTETTEHAQSPEERKRLDGLYECILCACCSAACPSYWWNAEAFLGPA 551

Query: 182 VLMQAYRWIIDSRDEATEKRLSKL 253
            L+ AYRW+ DSRDE   +R+  L
Sbjct: 552 ALLHAYRWVSDSRDEYAAERVQAL 575



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +1

Query: 268 VYRCHTIMNCTRTCPKGLNPGRAIAQIKTL 357
           +YRC  I +CT TCPK L+P  AI+ +KTL
Sbjct: 582 LYRCRMIKSCTATCPKSLDPAAAISAMKTL 611


>05_01_0502 +
           4191443-4191769,4191770-4191892,4194161-4194313,
           4194420-4194505,4194648-4194732,4194871-4194990,
           4195066-4195134,4195351-4195506
          Length = 372

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -1

Query: 589 LKSTSLEHSLAFVQFSLMSYFTFRKFTLNIH-----SIVATVKISALELQYHIYNLFINC 425
           LKS    +++   QF+  S+F    + LN+H     S+    KI  L L + + N+F N 
Sbjct: 111 LKSVPFPYTITTFQFASGSFFITLMWLLNLHPKPRLSLGQYAKILPLALVHTMGNVFTNM 170

Query: 424 SLSASA 407
           SL   A
Sbjct: 171 SLGKVA 176


>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 354 GFDLGNGPAWVQTFRACASAVHDCMATVH 268
           G D+G+GP W +T R     V   +ATVH
Sbjct: 480 GVDIGSGPEWNETRRHFEHYVDVFIATVH 508


>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
            5890540-5890710,5890840-5891007,5891139-5891234,
            5891777-5891839,5891949-5892114,5892207-5892274,
            5892646-5892789,5893111-5893176,5893329-5893520,
            5894567-5894657,5895241-5895329,5895521-5895583,
            5895698-5895823,5895902-5895991,5896059-5896181,
            5896503-5896619,5896704-5896904,5897643-5897723,
            5897897-5897977,5898083-5898184,5898264-5898488,
            5898571-5898726,5898798-5899010,5899306-5899455,
            5900082-5900204,5900299-5900364,5900555-5900620,
            5900686-5900817,5900891-5900965,5901355-5901438,
            5901516-5901668,5901741-5901806,5902044-5902205,
            5902272-5902388,5902495-5902566,5902702-5902761,
            5902869-5902985,5904131-5904430,5904518-5904622,
            5905710-5905775,5905853-5906297,5906399-5906567,
            5906684-5906736,5906819-5906925
          Length = 1981

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 96   VSMNVCYVL-AVRRVARRTGGMEIST*ALLSSCRPTGGSLTPEMKPLRNVYQNSGHILCV 272
            +S ++  ++ A+  +  R G  ++++  LL  C+     + PE  PLR   ++  H +C 
Sbjct: 1039 ISQSLARIMRALFEICLRRGWSQMTS-LLLEFCKGVDRKIWPEQHPLRQFDRDLSHEICK 1097

Query: 273  PLPYNH 290
             L   H
Sbjct: 1098 RLEEKH 1103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,864,266
Number of Sequences: 37544
Number of extensions: 427172
Number of successful extensions: 948
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)