Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00809
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34758| Best HMM Match : No HMM Matches (HMM E-Value=.)             139   2e-33
SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14)                    29   5.2  
SB_23153| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_34758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score =  139 bits (336), Expect = 2e-33
 Identities = 59/86 (68%), Positives = 73/86 (84%)
 Frame = +2

Query: 2   SIEPWLQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPA 181
           SIEP+L+++ +   GKE Q LQ ++DR KLDGLYEC+LCACCSTSCPSYWWN DKYLGPA
Sbjct: 10  SIEPYLKKKEQVEYGKE-QYLQSIDDRKKLDGLYECILCACCSTSCPSYWWNADKYLGPA 68

Query: 182 VLMQAYRWIIDSRDEATEKRLSKLRT 259
           VLMQAYRW+IDSRD+ T +R++ + T
Sbjct: 69  VLMQAYRWMIDSRDDFTAERVAFMDT 94


>SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14)
          Length = 360

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 316 LSGMCECSS*LYGNGTQSMCP 254
           +SG CEC+S  YG+  Q  CP
Sbjct: 171 VSGCCECNSGWYGDKCQYRCP 191


>SB_23153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 574 LEHSLAFVQFSLMSY-FTFRKFTLNIHSIVATVKISALELQYHIYNL 437
           L+H LAF+Q SL+ + +T R    ++   V T++ + + L   +Y +
Sbjct: 71  LDHFLAFLQVSLIRFVYTIRYAQESLIRFVCTIRYTQVSLIRFVYTI 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,796,636
Number of Sequences: 59808
Number of extensions: 481913
Number of successful extensions: 1071
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)