Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00809
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47809-2|CAA87780.1|  298|Caenorhabditis elegans Hypothetical pr...   133   1e-31
S50380-1|AAB24366.1|  161|Caenorhabditis elegans succinate-ubiqu...   133   1e-31
AB008569-1|BAA23717.1|  297|Caenorhabditis elegans iron-sulfur s...   133   1e-31
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AC024776-18|AAL32241.2|  201|Caenorhabditis elegans Nuclear horm...    28   6.0  
AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical...    28   8.0  

>Z47809-2|CAA87780.1|  298|Caenorhabditis elegans Hypothetical
           protein F42A8.2 protein.
          Length = 298

 Score =  133 bits (322), Expect = 1e-31
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = +2

Query: 2   SIEPWLQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPA 181
           SI+PW+Q++     G E Q+ Q V +R +LDGLYEC+LCACCSTSCPSYWWN DKYLGPA
Sbjct: 166 SIQPWIQKKTPLTLG-EKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPA 224

Query: 182 VLMQAYRWIIDSRDEATEKRLSKL 253
           VLMQAYRW+IDSRD+   +RL ++
Sbjct: 225 VLMQAYRWVIDSRDDYATERLHRM 248



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = +1

Query: 235 ETFIKTQDTYSVYRCHTIMNCTRTCPKGLNPGRAIAQIKTLLSGIVKKQPPIMDPA 402
           E   +  D++S ++CHTIMNCT+TCPK LNP +AI +IK+LL+G   K  P  +P+
Sbjct: 243 ERLHRMHDSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIKSLLTGFTSK--PAAEPS 296


>S50380-1|AAB24366.1|  161|Caenorhabditis elegans
           succinate-ubiquinone oxidoreductasecomplex II
           iron-sulfur subunit protein.
          Length = 161

 Score =  133 bits (322), Expect = 1e-31
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = +2

Query: 2   SIEPWLQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPA 181
           SI+PW+Q++     G E Q+ Q V +R +LDGLYEC+LCACCSTSCPSYWWN DKYLGPA
Sbjct: 60  SIQPWIQKKTPLTLG-EKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPA 118

Query: 182 VLMQAYRWIIDSRDEATEKRLSKL 253
           VLMQAYRW+IDSRD+   +RL ++
Sbjct: 119 VLMQAYRWVIDSRDDYATERLHRM 142



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 235 ETFIKTQDTYSVYRCHTIMNCTRTC 309
           E   +  D++S ++CHT+MNCTR C
Sbjct: 137 ERLHRMHDSFSAFKCHTMMNCTRIC 161


>AB008569-1|BAA23717.1|  297|Caenorhabditis elegans iron-sulfur
           subunit of mitochondrialsuccinate dehydrogenase protein.
          Length = 297

 Score =  133 bits (322), Expect = 1e-31
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = +2

Query: 2   SIEPWLQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPA 181
           SI+PW+Q++     G E Q+ Q V +R +LDGLYEC+LCACCSTSCPSYWWN DKYLGPA
Sbjct: 165 SIQPWIQKKTPLTLG-EKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPA 223

Query: 182 VLMQAYRWIIDSRDEATEKRLSKL 253
           VLMQAYRW+IDSRD+   +RL ++
Sbjct: 224 VLMQAYRWVIDSRDDYATERLHRM 247



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = +1

Query: 235 ETFIKTQDTYSVYRCHTIMNCTRTCPKGLNPGRAIAQIKTLLSGIVKKQPPIMDPA 402
           E   +  D++S ++CHTIMNCT+TCPK LNP +AI +IK+LL+G   K  P  +P+
Sbjct: 242 ERLHRMHDSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIKSLLTGFTSK--PAAEPS 295


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 52  DSIAPGCRGPRQVGWSL*MCAMCLLFDELPVVLV 153
           DSI P C     VGWSL  C+M  L   L ++ V
Sbjct: 212 DSIFPHCSSDYTVGWSLAECSMEHLHYRLRILAV 245


>AC024776-18|AAL32241.2|  201|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 146 protein.
          Length = 201

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +3

Query: 477 LTVATIE*MLRVNFLNVKYDI--NENCTKANECSNDVDFNLYY---HYKIFPLVISLHKH 641
           LT    E   + N+   K D+  ++NCT+ ++  ND++F++ Y     K+  +V  L K 
Sbjct: 110 LTGMMFEFKCQENWTGEKCDVRCDKNCTEPSKTINDMEFDVSYTVNPMKLETIVAMLKKD 169

Query: 642 QKIRNNV 662
            ++ N +
Sbjct: 170 NEVANTL 176


>AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical
           protein K12H6.6b protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = +3

Query: 213 TPEMKPLRNVYQNSGHILC------VPLPYNHELHSHMPERSEPR 329
           +P   PL+  Y N   IL       VPL Y H + SH P  S  R
Sbjct: 280 SPHCSPLQYPYSNPYSILLDAPWPTVPLQYPHNVTSHFPGASRQR 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,995,683
Number of Sequences: 27780
Number of extensions: 369059
Number of successful extensions: 914
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)