Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00809
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.0  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    22   5.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 219 EMKPLRNVYQNSGHILCVP 275
           EM  +  +  NSG ILCVP
Sbjct: 133 EMPSVECIVFNSGTILCVP 151


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 303 ASAVHDCMATVHRVCVLSFDKRFSVASSRESMI 205
           AS ++ CM +V R C ++   ++ V  +   MI
Sbjct: 127 ASILNLCMISVDRFCAITKPLKYGVKRTPRRMI 159


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 192 RPTGGSLTPEMKPLRNVYQNSGHILCVPLPYNHE 293
           +P+G  L+P  +PL N  + S  +     P + E
Sbjct: 17  QPSGDILSPSSEPLDNDKEQSAQVCYRGAPQDSE 50


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 192 RPTGGSLTPEMKPLRNVYQNSGHILCVPLPYNHE 293
           +P+G  L+P  +PL N  + S  +     P + E
Sbjct: 17  QPSGDILSPSSEPLDNDKEQSAQVCYRGAPQDSE 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,419
Number of Sequences: 438
Number of extensions: 4923
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)