Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00809
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur s...   129   2e-30
At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur s...   124   5e-29
At5g65165.1 68418.m08196 succinate dehydrogenase, iron-sulphur s...   118   3e-27
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   4.3  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   4.3  
At5g67330.1 68418.m08491 NRAMP metal ion transporter 4 (NRAMP4) ...    28   5.7  
At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containi...    28   5.7  

>At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-2) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-2) [gi:12049600] from Arabidopsis thaliana
          Length = 280

 Score =  129 bits (312), Expect = 2e-30
 Identities = 57/85 (67%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   SIEPWLQRENEA-VKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGP 178
           SIEPWL+R+N A V GKE  +LQ  +DR KLDG+YEC+LCACCSTSCPSYWWN + YLGP
Sbjct: 159 SIEPWLKRKNPASVPGKE--ILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGP 216

Query: 179 AVLMQAYRWIIDSRDEATEKRLSKL 253
           A L+ A RWI DSRDE T++RL  +
Sbjct: 217 AALLHANRWISDSRDEYTKERLEAI 241



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +1

Query: 256 DTYSVYRCHTIMNCTRTCPKGLNPGRAIAQIKTL 357
           D + +YRCHTI+NC R CPKGLNPG+ I  IK L
Sbjct: 243 DEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 276


>At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-1) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-1) [gi:12049598] from Arabidopsis thaliana
          Length = 279

 Score =  124 bits (300), Expect = 5e-29
 Identities = 55/85 (64%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   SIEPWLQRENEA-VKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGP 178
           SIEPWL+R+  A V  KE  +LQ  +DR KLDG+YEC+LCACCSTSCPSYWWN + YLGP
Sbjct: 160 SIEPWLKRKTPASVPAKE--ILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGP 217

Query: 179 AVLMQAYRWIIDSRDEATEKRLSKL 253
           A L+ A RWI DSRDE T++RL  +
Sbjct: 218 AALLHANRWISDSRDEYTKERLEAI 242



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +1

Query: 256 DTYSVYRCHTIMNCTRTCPKGLNPGRAIAQIKTL 357
           D + +YRCHTI+NC R CPKGLNPG+ I  IK L
Sbjct: 244 DEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 277


>At5g65165.1 68418.m08196 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-3) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-3) [gi:12049602] from Arabidopsis thaliana
          Length = 309

 Score =  118 bits (285), Expect = 3e-27
 Identities = 50/84 (59%), Positives = 63/84 (75%)
 Frame = +2

Query: 2   SIEPWLQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPA 181
           S+EPWL+       G+E +  Q  +DR KLDGLYEC+LCACC+TSCPSYWWN +++ GPA
Sbjct: 179 SMEPWLKTRKPPKDGREHR--QSPKDRKKLDGLYECILCACCTTSCPSYWWNPEEFPGPA 236

Query: 182 VLMQAYRWIIDSRDEATEKRLSKL 253
            L+QAYRWI DSRDE  E+RL  +
Sbjct: 237 ALLQAYRWISDSRDEYREERLQAI 260



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 20/35 (57%), Positives = 24/35 (68%)
 Frame = +1

Query: 250 TQDTYSVYRCHTIMNCTRTCPKGLNPGRAIAQIKT 354
           T+    VYRC  I NCT TCPKGLNP  AI ++K+
Sbjct: 261 TESETKVYRCRAIKNCTATCPKGLNPASAILKMKS 295


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 32/121 (26%), Positives = 50/121 (41%)
 Frame = -2

Query: 420  CLLLQASRIHYRWLLLNYTRE*GFDLGNGPAWVQTFRACASAVHDCMATVHRVCVLSFDK 241
            C+ L++ R+ ++ L ++YT    FDL   P  V  F   A A            V  F +
Sbjct: 770  CVSLKSIRLDFKKLPVHYTFSNCFDL--SPQVVNDFLVQAMANVIAKHIPRERHVTGFSQ 827

Query: 240  RFSVASSRESMIHL*ACMRTAGPRYLSPFHQYDGQLVEQQAHSTHS*RPSNLTRSSTSWS 61
            +    SSR+S   L    +T    + +P H      ++ Q  S      S++TR   SW 
Sbjct: 828  KTVQRSSRDSQQEL---NKTLAFSFCAPSHANQNSKLDLQPGS------SSMTRLDPSWR 878

Query: 60   N 58
            N
Sbjct: 879  N 879


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 32/121 (26%), Positives = 50/121 (41%)
 Frame = -2

Query: 420  CLLLQASRIHYRWLLLNYTRE*GFDLGNGPAWVQTFRACASAVHDCMATVHRVCVLSFDK 241
            C+ L++ R+ ++ L ++YT    FDL   P  V  F   A A            V  F +
Sbjct: 798  CVSLKSIRLDFKKLPVHYTFSNCFDL--SPQVVNDFLVQAMANVIAKHIPRERHVTGFSQ 855

Query: 240  RFSVASSRESMIHL*ACMRTAGPRYLSPFHQYDGQLVEQQAHSTHS*RPSNLTRSSTSWS 61
            +    SSR+S   L    +T    + +P H      ++ Q  S      S++TR   SW 
Sbjct: 856  KTVQRSSRDSQQEL---NKTLAFSFCAPSHANQNSKLDLQPGS------SSMTRLDPSWR 906

Query: 60   N 58
            N
Sbjct: 907  N 907


>At5g67330.1 68418.m08491 NRAMP metal ion transporter 4 (NRAMP4)
           identical to metal transporter Nramp4 [Arabidopsis
           thaliana] gi|6468014|gb|AAF13279; member of the natural
           resistance-associated macrophage protein (NRAMP) metal
           transporter family, PMID:11500563
          Length = 512

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 204 GSLTPEMKPLRNVYQNSGHILCVPLPYNHELHSHMPERSEPRP 332
           G+L P++   R + Q  G + C+ +P+N  LHS + +  E  P
Sbjct: 221 GALVPKLSS-RTIKQAVGIVGCIIMPHNVFLHSALVQSREVDP 262


>At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat;
           similar to ESTs gb|R30192 and gb|AA651017
          Length = 913

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 279 PYNHELHSHMPERSEPRPGH 338
           P+++ + SH+P++ EP P H
Sbjct: 879 PWSNSVDSHLPQQQEPGPSH 898


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,871,555
Number of Sequences: 28952
Number of extensions: 336210
Number of successful extensions: 747
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)