Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00808
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...   106   3e-24
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    88   1e-18
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   3.0  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   3.0  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    27   3.9  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    27   3.9  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    26   5.2  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   5.2  
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.2  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    26   5.2  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.1  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   9.1  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score =  106 bits (255), Expect = 3e-24
 Identities = 47/77 (61%), Positives = 58/77 (75%)
 Frame = +1

Query: 277 TNVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFTNLMPFLA 456
           TN YG+TKY IE ++KDL  +D+ W    LRYFNP+GAHPSGL+GEDP     NL+PFLA
Sbjct: 154 TNPYGKTKYAIENIIKDLHTSDNTWRGAILRYFNPIGAHPSGLLGEDPLGIPNNLLPFLA 213

Query: 457 QVALGKKPVLTVFGTDY 507
           QVA+G++  L VFG DY
Sbjct: 214 QVAIGRREKLLVFGDDY 230



 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 38/77 (49%), Positives = 45/77 (58%)
 Frame = +2

Query: 2   FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 181
           F+K DL DK  +  IFD   +  VIHFAALKAVGESM            G + LL +MR 
Sbjct: 59  FFKLDLRDKEGLAQIFDTFKIKGVIHFAALKAVGESMKLPLEYYDNNICGTITLLNVMRE 118

Query: 182 HNCYQMVFSSSCTVYGE 232
           H    +VFSSS TVYG+
Sbjct: 119 HRVKTVVFSSSATVYGD 135



 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
 Frame = +3

Query: 516 DGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVY---NLGTGKGVSVKELVNVFERVTK 686
           DGT IRDYIHV+DLA GH+AALN L++ +    +Y   NLGTGKG SV ++ + F +   
Sbjct: 234 DGTPIRDYIHVVDLAKGHIAALNYLNKINNSEGMYREWNLGTGKGSSVFDIYHAFCKEVG 293

Query: 687 AKVPLKYVDRRLGDISAMWADTSLA 761
             +P + V RR GD+  + A  + A
Sbjct: 294 KDLPYEVVGRRTGDVLNLTASPNRA 318


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 41/77 (53%), Positives = 53/77 (68%)
 Frame = +1

Query: 277 TNVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFTNLMPFLA 456
           T+ YGRTK FIE +++D +  +   N   LRYFNP GAHPSG +GEDP     NL+P++A
Sbjct: 155 TSPYGRTKLFIENIIEDETKVNKSLNAALLRYFNPGGAHPSGELGEDPLGIPNNLLPYIA 214

Query: 457 QVALGKKPVLTVFGTDY 507
           QVA+G+   L VFG DY
Sbjct: 215 QVAVGRLDHLNVFGDDY 231



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 40/92 (43%), Positives = 54/92 (58%)
 Frame = +2

Query: 2   FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 181
           F++ DLLD+P ++ +F    +  VIHFA LKAVGES+            G +NL+E M+ 
Sbjct: 60  FHQVDLLDEPALDKVFANQNISAVIHFAGLKAVGESVQVPLSYYKNNISGTINLIECMKK 119

Query: 182 HNCYQMVFSSSCTVYGEPEHLPITGLIPLEVS 277
           +N    VFSSS TVYG+P   P  G IP+  S
Sbjct: 120 YNVRDFVFSSSATVYGDPTR-P-GGTIPIPES 149



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 37/86 (43%), Positives = 53/86 (61%)
 Frame = +3

Query: 510 TPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKA 689
           T DGT IRDYIHV DLA  HVAAL+ L Q  +  + +NLG+G G +V +++N F +    
Sbjct: 233 TSDGTPIRDYIHVCDLAEAHVAALDYLRQHFVSCRPWNLGSGTGSTVFQVLNAFSKAVGR 292

Query: 690 KVPLKYVDRRLGDISAMWADTSLAKK 767
            +P K   RR GD+  + A+ + A +
Sbjct: 293 DLPYKVTPRRAGDVVNLTANPTRANE 318


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 620 QSGYRQRSFSQRISERIRK--SHKSQSATQVRRSKTWRHQRH 739
           Q G R   +   +S R  +  S +S  + ++RR  +W+H ++
Sbjct: 31  QKGARYNRYVDDVSSRRDRHDSFRSHESNKIRRDNSWKHDKY 72


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 325 DLSAADDKWNIISLRYFNPVGAHPSGLIGED 417
           D   A+D++   + R+F P+   PS +  ED
Sbjct: 81  DPKLAEDRYRSSAARHFEPISIPPSAITSED 111


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 401 G*SAKTLLRSSPTSCHSSRKLLSARNLC 484
           G +++  LR+ PT    S KLL A NLC
Sbjct: 279 GIASRISLRTIPTQSCFSEKLLKAANLC 306


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
 Frame = +1

Query: 169 DNAITQLLPNGVLVVMHSLRRT*TL-ADHGTHPTGSITNVYGRTKYFIEEMLKD-LSAAD 342
           D+AI  L  + + +    ++   TL  DH +   G I    G+TK+ IE   +  +  AD
Sbjct: 153 DDAIALLRLDDLYIDTFEIKDVKTLQGDHLSRAIGRIAGQGGKTKFAIENASRTRIVLAD 212

Query: 343 DKWNIIS--LRYFNPVGAHPSGLIGEDPTKEFTNL 441
            K +I+           A  S ++G  P K + NL
Sbjct: 213 SKIHILGGFTNIRIAKDAVVSLILGSPPGKVYANL 247


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -3

Query: 557 QIHDVYVISNTSSIGSV*SVPKTVSTGFLPRATCARNGMRLVNSLVGSSPISPEGCAPTG 378
           QIH+++   NT+  G++  V K ++  F  +     NGM +  S +G     P GC   G
Sbjct: 65  QIHNIF---NTNVFGAL-EVIKAITPIFRSQ----HNGMIINVSSIGGKMTFPLGCLYYG 116

Query: 377 LKYRRE 360
            KY  E
Sbjct: 117 TKYAIE 122


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 79  FCGTQSSWGIDAATLIILPEQPAWDAQLIGD 171
           F G  + WG    TL  L E PAW  + +G+
Sbjct: 90  FRGIVNEWGRSERTLDSLDEPPAWFRREMGE 120


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 659 SERIRKSHKSQSATQVRRSKTWRHQRH 739
           S+R R+S K +S TQ++ S   +H+RH
Sbjct: 57  SDRRRQSRKKKS-TQIQASDEMKHRRH 82


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -3

Query: 557 QIHDVYVISNTSSIGSV*SVPKTVSTGFLPRATCARNGMRLVNSLVGSSPISPEGCAPTG 378
           QIH+++   NT+  G++  V K ++  F  +     NGM +  S +G     P GC   G
Sbjct: 65  QIHNIF---NTNVFGAL-EVIKAITPIFRSQ----HNGMIINVSSIGGKMTFPLGCLYYG 116

Query: 377 LKYRRE 360
            KY  E
Sbjct: 117 TKYAIE 122


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 436 NLMPFLAQVALGKKPVLTVFGTDYTLPMELVFEITYTSWI 555
           N   +    ALG  P L+ F   YT  M  VF IT T WI
Sbjct: 287 NFAAYHLGTALG--PSLSGFIVQYTPHMYYVFYITSTFWI 324


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 321 EHFLDEVLRSAVNICDTSSGMSPVIGKCSGSP*TVHD 211
           E F DE L+ A  + D     S V+G   G P ++ D
Sbjct: 99  EIFFDEALKKAKELDDVFQKTSKVVGPFHGIPISLKD 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,519
Number of Sequences: 5004
Number of extensions: 73271
Number of successful extensions: 218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)