Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00808
(772 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0) 125 3e-29
SB_15042| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_3064| Best HMM Match : Adhesin_P1 (HMM E-Value=2.3) 31 0.78
SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11) 29 3.1
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 29 4.2
SB_53615| Best HMM Match : GETHR (HMM E-Value=5.3e-09) 28 9.6
SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5) 28 9.6
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
Length = 869
Score = 125 bits (302), Expect = 3e-29
Identities = 56/87 (64%), Positives = 67/87 (77%)
Frame = +1
Query: 256 THPTGSITNVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFT 435
+HP G TN YG+TKYFIEEMLKDL A+ ++NI+SLRYFNPVGAH SG IGEDP
Sbjct: 177 SHPAGGCTNPYGKTKYFIEEMLKDLCYAEKEFNIVSLRYFNPVGAHKSGKIGEDPKDIPN 236
Query: 436 NLMPFLAQVALGKKPVLTVFGTDYTLP 516
NL+P++ QVA+GK+P L VFG DY P
Sbjct: 237 NLLPYITQVAVGKRPHLNVFGKDYDTP 263
Score = 103 bits (248), Expect = 1e-22
Identities = 49/86 (56%), Positives = 63/86 (73%)
Frame = +3
Query: 510 TPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKA 689
TPDGTG+RDYIHV+DLA GHVAAL + + KVYNLGTG+G SV E+V E+ +
Sbjct: 262 TPDGTGVRDYIHVVDLAMGHVAALKKVEEK-CGWKVYNLGTGRGYSVLEMVKAVEKASGK 320
Query: 690 KVPLKYVDRRLGDISAMWADTSLAKK 767
++P K+ DRR GDI++ +AD SLA K
Sbjct: 321 EIPYKFTDRRAGDIASCYADPSLAAK 346
Score = 85.0 bits (201), Expect = 6e-17
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +2
Query: 2 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 181
F+ DLL+K ++ IF KH + V+HFA LKAVGES+ G L+LLE M+
Sbjct: 92 FFIEDLLNKEALDDIFKKHKFNGVLHFAGLKAVGESVQIPLRYYHNNLTGTLHLLECMKK 151
Query: 182 HNCYQMVFSSSCTVYGEPEHLPIT 253
H + +VFSSS TVYG+P+ LPIT
Sbjct: 152 HGVHNLVFSSSATVYGDPQFLPIT 175
>SB_15042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +3
Query: 564 GHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKAKV 695
GHVAAL + + KVYNLGTG+G SV E+V E+ + +V
Sbjct: 2 GHVAALKKVEEK-CGWKVYNLGTGRGYSVLEMVKAVEKASGKEV 44
>SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 32.3 bits (70), Expect = 0.45
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 1/115 (0%)
Frame = +3
Query: 183 TIATKWCSRRHAQSTANLNTCRSRDSSHWKYHKCLRQNEVLHRGNAQRLKRC***MEHYL 362
T A ++ R+HA + +N R+R + R + H G+ Q R + +
Sbjct: 433 TCARRYKLRKHAHAGSNYGNMRTRVQITETCARGFRTGKHAHAGSDQENMRTQVQITENM 492
Query: 363 PPVFQPCR-CTSFRADRRRPY*GVHQPHAIPRASCSRQETCAHRFRNRLHTPDGT 524
Q C R+ Y G + + R ETCA R+R+R H GT
Sbjct: 493 RTRVQITETCARRYRSRKHAYAGTNYGNM--RTQVQITETCARRYRSRKHAHAGT 545
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 474 ETCAHRFRNRLHTPDGT 524
ETCA R+R+R HT GT
Sbjct: 316 ETCARRYRSRKHTHAGT 332
>SB_3064| Best HMM Match : Adhesin_P1 (HMM E-Value=2.3)
Length = 353
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +2
Query: 593 PNPYQTKGLQSGYRQRSFSQRISERIRKSHKSQSATQVRRSKTWRHQRHVGGHLTG 760
PN Y T Y ++ +Q + + SH ++ ++ ++K RH + ++TG
Sbjct: 30 PNTYSTTSTNGSYHTQAKAQSHDKIVAASHTQTTSARLTQTKAARHDCNQSSNITG 85
>SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/74 (24%), Positives = 28/74 (37%)
Frame = +2
Query: 8 KADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHN 187
K D+ + + IF +D V+HFAA V S G L+ +
Sbjct: 54 KGDICEANHLKYIFQAEQIDTVLHFAAQSHVDNSFWSSLDFTKTNVYGTHVLINVAHEAK 113
Query: 188 CYQMVFSSSCTVYG 229
+ + S+ VYG
Sbjct: 114 IKKFIHVSTDEVYG 127
>SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)
Length = 540
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 480 CAHRFRNRLHTPDGTGIRDYIH 545
C H +NR+HT DG D H
Sbjct: 470 CCHNLKNRVHTTDGAPASDVTH 491
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/73 (32%), Positives = 34/73 (46%)
Frame = +1
Query: 307 IEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFTNLMPFLAQVALGKKPVL 486
+EEM L ++K L F PVG P E+ K+ ++ PF VA +KPV
Sbjct: 4507 LEEMKVWLKETEEK-----LEAFEPVGVEP-----ENVKKQLSDHTPFNTDVASHEKPVH 4556
Query: 487 TVFGTDYTLPMEL 525
+ T TL + L
Sbjct: 4557 AICETGETLMIAL 4569
>SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 725
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 471 QETCAHRFRNRLHTPDGTGIRDYIHV-MDLASGHVAALNLLSQTHIRLKVYNLGTGKGVS 647
Q T AH + + T GTG+R +HV + AS H + + HI+ + + VS
Sbjct: 627 QHTDAHGYLSGCPTNLGTGMRASVHVKIPKASEHPDFQKICDEFHIQAR--GIHGEHSVS 684
Query: 648 VKELVNVFERVTKAKVPLKYV 710
E VF+ K ++ L V
Sbjct: 685 TGEDAGVFDISNKRRLGLSEV 705
>SB_53615| Best HMM Match : GETHR (HMM E-Value=5.3e-09)
Length = 653
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/111 (18%), Positives = 40/111 (36%)
Frame = +2
Query: 383 SVHILQG*SAKTLLRSSPTSCHSSRKLLSARNLCSPFSEPTTHSRWNWYSRLHTRHGFG* 562
S H + T R S + +R+ LS +TH+R N H R
Sbjct: 522 STHARESLRESTHARESLSESTHARESLSESTRARESLSESTHARENLSESTHARENLSE 581
Query: 563 RACSRVKFTQPNPYQTKGLQSGYRQRSFSQRISERIRKSHKSQSATQVRRS 715
C+R ++ + +S + + S S+ R + + + + +S
Sbjct: 582 STCARESLSESTHARENLSESTHARESLSESTCARESLNESTHARESLSKS 632
>SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5)
Length = 690
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 474 LAESNLREEWHEVGELLSRVFADQP 400
+ ++ LR EWH+ L RV +D+P
Sbjct: 529 IRQTLLRSEWHQTNPFLLRVASDKP 553
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 145 AWDAQLIGDNAITQLLPNG-VLVVMHSLRRT*TLADHGTHPTGSITNVYGRTKYFIEEML 321
AW + IGD I Q + +G +VM A+H + + +T + G + ++ + L
Sbjct: 3188 AWKDRGIGDIKILQNVSSGKARIVMRREHIHKLCANHLINASMELTPLAGSDRAWVWQTL 3247
Query: 322 KDLSAADDKWNIISLRYFN 378
D+S + K +++R+ N
Sbjct: 3248 ADISEEEAKPEELAVRFKN 3266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,155,368
Number of Sequences: 59808
Number of extensions: 595059
Number of successful extensions: 2243
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2235
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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