Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00808
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-12|CAI79146.1|  349|Caenorhabditis elegans Hypothetical p...   108   4e-24
Z99709-11|CAB16861.1|  347|Caenorhabditis elegans Hypothetical p...   108   4e-24
U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    33   0.30 
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    33   0.30 
U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U64847-1|AAN84827.1|  358|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    29   4.8  
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    28   8.5  
AF077537-8|AAC26277.1|  226|Caenorhabditis elegans Hypothetical ...    28   8.5  
AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective spe...    28   8.5  

>Z99709-12|CAI79146.1|  349|Caenorhabditis elegans Hypothetical
           protein C47B2.6b protein.
          Length = 349

 Score =  108 bits (260), Expect = 4e-24
 Identities = 46/78 (58%), Positives = 62/78 (79%)
 Frame = +1

Query: 274 ITNVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFTNLMPFL 453
           ITN YG+TKY +E++L D+  A+ +WN++ LRYFNPVGAH SGLIGEDP     NLMP++
Sbjct: 154 ITNPYGQTKYMMEQILIDVGKANPEWNVVLLRYFNPVGAHKSGLIGEDPKGVPNNLMPYV 213

Query: 454 AQVALGKKPVLTVFGTDY 507
           +QVA+GK PVLT++G  +
Sbjct: 214 SQVAIGKLPVLTIYGDQF 231



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 39/93 (41%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
 Frame = +3

Query: 492 FRNRLHTPDGTGIRDYIHVMDLASGHVAALNLLSQT-HIRLKVYNLGTGKGVSVKELVNV 668
           + ++  T DGTG+RDYIHV+DLA GHV A + +    +I  ++YNLGTG G SV+++V+ 
Sbjct: 227 YGDQFDTVDGTGVRDYIHVVDLAKGHVKAFDRIKTVGNIGTEIYNLGTGVGYSVRQMVDA 286

Query: 669 FERVTKAKVPLKYVDRRLGDISAMWADTSLAKK 767
            ++V+   +P+K    R GD+++++ D SLA++
Sbjct: 287 LKKVSGRDIPVKIGVPRPGDVASVYCDPSLAQE 319



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 34/84 (40%), Positives = 46/84 (54%)
 Frame = +2

Query: 2   FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 181
           F   D+ D+  +  +F ++  D +IH AALKAVGES+              LNL+++   
Sbjct: 62  FQNVDVCDEAALEKVFSENKFDGIIHLAALKAVGESVAKPLQYYSNNLVASLNLIQMCLK 121

Query: 182 HNCYQMVFSSSCTVYGEPEHLPIT 253
           +N    VFSSS TVYG P  LPIT
Sbjct: 122 YNVKNFVFSSSATVYGPPSELPIT 145


>Z99709-11|CAB16861.1|  347|Caenorhabditis elegans Hypothetical
           protein C47B2.6a protein.
          Length = 347

 Score =  108 bits (260), Expect = 4e-24
 Identities = 46/78 (58%), Positives = 62/78 (79%)
 Frame = +1

Query: 274 ITNVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFTNLMPFL 453
           ITN YG+TKY +E++L D+  A+ +WN++ LRYFNPVGAH SGLIGEDP     NLMP++
Sbjct: 152 ITNPYGQTKYMMEQILIDVGKANPEWNVVLLRYFNPVGAHKSGLIGEDPKGVPNNLMPYV 211

Query: 454 AQVALGKKPVLTVFGTDY 507
           +QVA+GK PVLT++G  +
Sbjct: 212 SQVAIGKLPVLTIYGDQF 229



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 39/93 (41%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
 Frame = +3

Query: 492 FRNRLHTPDGTGIRDYIHVMDLASGHVAALNLLSQT-HIRLKVYNLGTGKGVSVKELVNV 668
           + ++  T DGTG+RDYIHV+DLA GHV A + +    +I  ++YNLGTG G SV+++V+ 
Sbjct: 225 YGDQFDTVDGTGVRDYIHVVDLAKGHVKAFDRIKTVGNIGTEIYNLGTGVGYSVRQMVDA 284

Query: 669 FERVTKAKVPLKYVDRRLGDISAMWADTSLAKK 767
            ++V+   +P+K    R GD+++++ D SLA++
Sbjct: 285 LKKVSGRDIPVKIGVPRPGDVASVYCDPSLAQE 317



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 34/84 (40%), Positives = 46/84 (54%)
 Frame = +2

Query: 2   FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 181
           F   D+ D+  +  +F ++  D +IH AALKAVGES+              LNL+++   
Sbjct: 60  FQNVDVCDEAALEKVFSENKFDGIIHLAALKAVGESVAKPLQYYSNNLVASLNLIQMCLK 119

Query: 182 HNCYQMVFSSSCTVYGEPEHLPIT 253
           +N    VFSSS TVYG P  LPIT
Sbjct: 120 YNVKNFVFSSSATVYGPPSELPIT 143


>U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B1.4 protein.
          Length = 342

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2   FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLE-IMR 178
           F +A L D+P +     ++ VD VIHFAA+  V ES                 LLE I+ 
Sbjct: 64  FVEAALEDQPTLIKTLQENEVDMVIHFAAITHVDESYSDRIGTIQDNIISTTTLLESIVN 123

Query: 179 S--HNCYQMVFSSSCTVYGE 232
           S      ++V  S+  VYG+
Sbjct: 124 SPYKGVKKLVHISTDEVYGD 143


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
            ZK512.3 protein.
          Length = 1418

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -1

Query: 610  SLIWVWLSKFNAATCPLAKSMTCM*SRIPVPSGVCSRFRKR*AQVSCREQ 461
            +L W+WLS F      L++S TC  S +  P   CS   +  A  SC  Q
Sbjct: 931  TLSWIWLSLFTTDLSNLSESETCRKSFLGAPKRYCSSVGQY-ANPSCPSQ 979


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
           homologous cationchannel protein protein.
          Length = 1027

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -1

Query: 610 SLIWVWLSKFNAATCPLAKSMTCM*SRIPVPSGVCSRFRKR*AQVSCREQ 461
           +L W+WLS F      L++S TC  S +  P   CS   +  A  SC  Q
Sbjct: 540 TLSWIWLSLFTTDLSNLSESETCRKSFLGAPKRYCSSVGQY-ANPSCPSQ 588


>U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical
           protein R02F2.7 protein.
          Length = 693

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 633 GKGVSVKELVNVFERVTKAKVPLKYVDRRLGDIS 734
           GKG   + ++ VF++V +   P+K+V+R   D++
Sbjct: 409 GKGSENENILKVFKKVAQEAAPVKFVNRTAADVA 442


>Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical
           protein M110.3 protein.
          Length = 189

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 195 KWCSRRHAQSTAN-LNTCRSRDSSHWKYHKCL 287
           K+C    + +  + ++ CR R S HW +H+CL
Sbjct: 17  KFCFGTESDNALSFVHPCRCRGSIHWVHHQCL 48


>U64847-1|AAN84827.1|  358|Caenorhabditis elegans Hypothetical
           protein F08F3.4 protein.
          Length = 358

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 14  DLLDKPQINAIFDKHPVDCVIHFAA-LKAVGESMXXXXXXXXXXXXGMLNLLEIMRSH 184
           D+L++  I  I     +D ++HF+A L AVGE+             G+ N+L++   H
Sbjct: 88  DILNQGSIEEIVVNKNIDTIVHFSALLSAVGET--NVPLALQVNCRGVENILQVAAKH 143


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
           protein Y51H4A.9 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 602 YQTKGLQSGYRQRSFSQRISERIRKSHKSQSATQVRRSKTWRHQ 733
           ++T GL   Y+     Q ++ R+R+S   +   Q+ RSK  R Q
Sbjct: 59  HRTDGLWDEYKNFQNLQGVTGRLRRSTNKRHTGQMNRSKKMRRQ 102


>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
            protein C34D4.14 protein.
          Length = 2761

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 641  SFSQRISERIRKSHK-SQSATQVRRSKTWRHQRHVGG 748
            S  QR   R R S+K S+S ++V R K WR +   GG
Sbjct: 1468 SMLQRSRHRSRGSYKISESKSKVVRGKDWRWEDQDGG 1504


>AF077537-8|AAC26277.1|  226|Caenorhabditis elegans Hypothetical
           protein F16G10.9 protein.
          Length = 226

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -1

Query: 718 LRSTYLSGTLAFVTLSNTFTNSLTETP---LPVPRL*TFSLIWVWLSKFNAATCP 563
           + ST   G ++ +T    +T++ TE P   L +  L  F L+   L K +AATCP
Sbjct: 55  VESTMAPG-VSTMTPGGIYTSAETEAPEVILQLTNLSKFQLVSEQLCKISAATCP 108


>AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective
           spermatogenesis protein 8 protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 534 DYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTG-KGVSVKE 656
           DY+H   +    +AA N L  +   LK+ + G   KGV++KE
Sbjct: 333 DYLHGKQVIHRDIAARNCLLNSKKILKISDFGLSVKGVAIKE 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,121,528
Number of Sequences: 27780
Number of extensions: 424254
Number of successful extensions: 1313
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)