Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00808
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 474 ETCAHRFRNRLHTPDGTGIRDYIHVMDLASGHVAALNLLSQ 596
           E+  HR +NRL+T D T  +     +D    +   L+ L Q
Sbjct: 202 ESEQHRLQNRLYTNDSTSSKTDDDSIDFDRMNSLGLSWLDQ 242


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 474 ETCAHRFRNRLHTPDGTGIRDYIHVMDLASGHVAALNLLSQ 596
           E+  HR +NRL+T D T  +     +D    +   L+ L Q
Sbjct: 240 ESEQHRLQNRLYTNDSTSSKTDDDSIDFDRMNSLGLSWLDQ 280


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 428  SSPTSCHSSRKLLSARNLCSPFSEPTTH 511
            SS +S +SS    S+ + C+P  +PT +
Sbjct: 953  SSSSSFYSSFLYKSSESSCNPDQKPTEY 980


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 537 YIHVMDLASGHVAALNLLSQTHIRLKVYNLG 629
           Y HV + +S  +  L+ +  TH    VY LG
Sbjct: 272 YPHVPEYSSSIIMELHNIEGTHYVKIVYYLG 302


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 537 YIHVMDLASGHVAALNLLSQTHIRLKVYNLG 629
           Y HV + +S  +  L+ +  TH    VY LG
Sbjct: 287 YPHVPEYSSSIIMELHNIEGTHYVKIVYYLG 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,706
Number of Sequences: 438
Number of extensions: 5165
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)