Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00808
(772 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP... 116 2e-26
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 111 7e-25
At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative / UDP... 105 4e-23
At1g63180.1 68414.m07140 UDP-glucose 4-epimerase, putative / UDP... 104 7e-23
At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose... 101 5e-22
At1g30620.1 68414.m03745 UDP-D-xylose 4-epimerase, putative (MUR... 74 9e-14
At2g34850.1 68415.m04279 NAD-dependent epimerase/dehydratase fam... 70 2e-12
At5g44480.1 68418.m05450 NAD-dependent epimerase/dehydratase fam... 69 3e-12
At4g20460.1 68417.m02985 NAD-dependent epimerase/dehydratase fam... 67 1e-11
At2g45310.1 68415.m05639 NAD-dependent epimerase/dehydratase fam... 43 3e-04
At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase fam... 41 8e-04
At4g00110.1 68417.m00011 NAD-dependent epimerase/dehydratase fam... 38 0.007
At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase fam... 38 0.010
At4g12250.1 68417.m01942 NAD-dependent epimerase/dehydratase fam... 38 0.010
At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase fam... 38 0.010
At1g73250.1 68414.m08477 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 33 0.21
At1g17890.3 68414.m02214 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 32 0.48
At1g17890.2 68414.m02213 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 32 0.48
At1g17890.1 68414.m02215 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 32 0.48
At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase fam... 31 0.84
At3g15370.1 68416.m01949 expansin, putative (EXP12) similar to e... 30 1.5
At2g33630.1 68415.m04123 3-beta hydroxysteroid dehydrogenase/iso... 30 1.5
At4g33360.1 68417.m04743 terpene cyclase/mutase-related low simi... 29 2.6
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 29 2.6
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 29 3.4
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 29 3.4
At1g17455.1 68414.m02138 expressed protein 29 4.5
At3g52310.1 68416.m05749 ABC transporter family protein contains... 28 7.9
At2g43620.1 68415.m05422 chitinase, putative similar to basic en... 28 7.9
>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 350
Score = 116 bits (279), Expect = 2e-26
Identities = 52/79 (65%), Positives = 62/79 (78%)
Frame = +1
Query: 271 SITNVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFTNLMPF 450
S TN YGRTK FIEE+ +D+ +D +W II LRYFNPVGAHPSG IGEDP NLMP+
Sbjct: 148 SATNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGYIGEDPLGVPNNLMPY 207
Query: 451 LAQVALGKKPVLTVFGTDY 507
+ QVA+G++P LTVFGTDY
Sbjct: 208 VQQVAVGRRPHLTVFGTDY 226
Score = 98.7 bits (235), Expect = 4e-21
Identities = 46/86 (53%), Positives = 57/86 (66%)
Frame = +3
Query: 510 TPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKA 689
T DGTG+RDYIHVMDLA GH+AAL L I +VYNLGTG G SV E+V FE+ +
Sbjct: 228 TKDGTGVRDYIHVMDLADGHIAALRKLDDLKISCEVYNLGTGNGTSVLEMVAAFEKASGK 287
Query: 690 KVPLKYVDRRLGDISAMWADTSLAKK 767
K+PL RR GD ++A T A++
Sbjct: 288 KIPLVMAGRRPGDAEVVYASTEKAER 313
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/95 (41%), Positives = 54/95 (56%)
Frame = +2
Query: 2 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 181
F++ DL D+P + IF + D VIHFA LKAVGES+ G + LLE+M
Sbjct: 59 FHQVDLRDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLLEVMAQ 118
Query: 182 HNCYQMVFSSSCTVYGEPEHLPITGLIPLEVSQMF 286
+ C +VFSSS TVYG P+ +P T P+ + +
Sbjct: 119 YGCKNLVFSSSATVYGWPKEVPCTEESPISATNPY 153
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 111 bits (266), Expect = 7e-25
Identities = 51/79 (64%), Positives = 60/79 (75%)
Frame = +1
Query: 271 SITNVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFTNLMPF 450
S N YGRTK FIEE+ +D+ +D +W II LRYFNPVGAHPSG IGEDP NLMPF
Sbjct: 149 SALNPYGRTKLFIEEICRDVYGSDPEWKIILLRYFNPVGAHPSGDIGEDPRGIPNNLMPF 208
Query: 451 LAQVALGKKPVLTVFGTDY 507
+ QVA+G++P LTVFG DY
Sbjct: 209 VQQVAVGRRPHLTVFGNDY 227
Score = 100 bits (239), Expect = 1e-21
Identities = 47/91 (51%), Positives = 60/91 (65%)
Frame = +3
Query: 492 FRNRLHTPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVF 671
F N +T DGTG+RDYIHV+DLA GH+AAL L I +VYNLGTG G SV E+V+ F
Sbjct: 223 FGNDYNTKDGTGVRDYIHVIDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAF 282
Query: 672 ERVTKAKVPLKYVDRRLGDISAMWADTSLAK 764
E+ + K+PL RR GD ++A T A+
Sbjct: 283 EKASGKKIPLVIAGRRPGDAEVVYASTERAE 313
Score = 83.0 bits (196), Expect = 2e-16
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = +2
Query: 2 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 181
F++ DL D+ + IF + D VIHFA LKAVGES+ G + LLE+M
Sbjct: 60 FHQVDLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQ 119
Query: 182 HNCYQMVFSSSCTVYGEPEHLPITGLIPL 268
H C +VFSSS TVYG P+ +P T P+
Sbjct: 120 HGCKNLVFSSSATVYGSPKEVPCTEEFPI 148
>At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082] (Plant Sci. 142, 147-154 (1999))
Length = 348
Score = 105 bits (251), Expect = 4e-23
Identities = 45/75 (60%), Positives = 56/75 (74%)
Frame = +1
Query: 286 YGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFTNLMPFLAQVA 465
YGRTK FIE++ +D+ D +W II LRYFNPVGAHPSG IGEDP NLMP++ QV
Sbjct: 153 YGRTKLFIEDICRDVQRGDPEWRIIMLRYFNPVGAHPSGRIGEDPCGTPNNLMPYVQQVV 212
Query: 466 LGKKPVLTVFGTDYT 510
+G+ P L ++GTDYT
Sbjct: 213 VGRLPNLKIYGTDYT 227
Score = 101 bits (241), Expect = 7e-22
Identities = 46/86 (53%), Positives = 60/86 (69%)
Frame = +3
Query: 510 TPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKA 689
T DGTG+RDYIHV+DLA GH+ AL L T I +VYNLGTGKG +V E+V+ FE+ +
Sbjct: 228 TKDGTGVRDYIHVVDLADGHICALQKLDDTEIGCEVYNLGTGKGTTVLEMVDAFEKASGM 287
Query: 690 KVPLKYVDRRLGDISAMWADTSLAKK 767
K+PL V RR GD ++A T A++
Sbjct: 288 KIPLVKVGRRPGDAETVYASTEKAER 313
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/88 (43%), Positives = 52/88 (59%)
Frame = +2
Query: 5 YKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSH 184
++ DL DKP + +F + D V+HFA LKAVGES+ + LLE+M +H
Sbjct: 60 HQVDLRDKPALEKVFSETKFDAVMHFAGLKAVGESVAKPLLYYNNNLIATITLLEVMAAH 119
Query: 185 NCYQMVFSSSCTVYGEPEHLPITGLIPL 268
C ++VFSSS TVYG P+ +P T PL
Sbjct: 120 GCKKLVFSSSATVYGWPKEVPCTEESPL 147
>At1g63180.1 68414.m07140 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative strong similarity to SP|Q42605 [GI:1143392]
from [Arabidopsis thaliana] (Arch. Biochem. Biophys. 327
(1), 27-34 (1996))
Length = 351
Score = 104 bits (249), Expect = 7e-23
Identities = 47/76 (61%), Positives = 57/76 (75%)
Frame = +1
Query: 280 NVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFTNLMPFLAQ 459
N YGRTK F+EE+ +D+ AA+ +W II LRYFNPVGAH SG IGEDP NLMP++ Q
Sbjct: 156 NPYGRTKLFLEEIARDIHAAEPEWKIILLRYFNPVGAHESGRIGEDPKGIPNNLMPYIQQ 215
Query: 460 VALGKKPVLTVFGTDY 507
VA+G+ P L VFG DY
Sbjct: 216 VAVGRLPELNVFGHDY 231
Score = 99.5 bits (237), Expect = 2e-21
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Frame = +3
Query: 510 TPDGTGIRDYIHVMDLASGHVAALN-LLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTK 686
T DG+ +RDYIHVMDLA GHVAALN L S + I YNLGTG+G SV E+V+ FE+ +
Sbjct: 233 TMDGSAVRDYIHVMDLADGHVAALNKLFSDSKIGCTAYNLGTGQGTSVLEMVSSFEKASG 292
Query: 687 AKVPLKYVDRRLGDISAMWADTSLAKK 767
K+P+K RR GD +A++A T A+K
Sbjct: 293 KKIPIKLCPRRAGDATAVYASTQKAEK 319
Score = 77.4 bits (182), Expect = 1e-14
Identities = 39/82 (47%), Positives = 46/82 (56%)
Frame = +2
Query: 2 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 181
F DL +K I +F D VIHFA LKAVGES+ G +NL E M
Sbjct: 64 FNLGDLRNKGDIEKLFSNQRFDAVIHFAGLKAVGESVGNPRRYFDNNLVGTINLYETMAK 123
Query: 182 HNCYQMVFSSSCTVYGEPEHLP 247
+NC MVFSSS TVYG+PE +P
Sbjct: 124 YNCKMMVFSSSATVYGQPEIVP 145
>At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose
4-epimerase / Galactowaldenase identical to SP|Q42605
[GB:CAA90941] from [Arabidopsis thaliana] (Arch.
Biochem. Biophys. 327 (1), 27-34 (1996))
Length = 351
Score = 101 bits (242), Expect = 5e-22
Identities = 45/76 (59%), Positives = 56/76 (73%)
Frame = +1
Query: 280 NVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFTNLMPFLAQ 459
N YGRTK F+EE+ +D+ A+ +W II LRYFNPVGAH SG IGEDP NLMP++ Q
Sbjct: 156 NPYGRTKLFLEEIARDIQKAEPEWRIILLRYFNPVGAHESGSIGEDPKGIPNNLMPYIQQ 215
Query: 460 VALGKKPVLTVFGTDY 507
VA+G+ P L V+G DY
Sbjct: 216 VAVGRLPELNVYGHDY 231
Score = 94.3 bits (224), Expect = 8e-20
Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Frame = +3
Query: 510 TPDGTGIRDYIHVMDLASGHVAALN-LLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTK 686
T DG+ +RDYIHVMDLA GH+AAL L + I YNLGTG+G SV E+V FE+ +
Sbjct: 233 TEDGSAVRDYIHVMDLADGHIAALRKLFADPKIGCTAYNLGTGQGTSVLEMVAAFEKASG 292
Query: 687 AKVPLKYVDRRLGDISAMWADTSLAKK 767
K+P+K RR GD +A++A T A+K
Sbjct: 293 KKIPIKLCPRRSGDATAVYASTEKAEK 319
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/82 (48%), Positives = 47/82 (57%)
Frame = +2
Query: 2 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 181
F DL +K I +F K D VIHFA LKAVGES+ G +NL E M
Sbjct: 64 FNLGDLRNKGDIEKLFSKQRFDAVIHFAGLKAVGESVENPRRYFDNNLVGTINLYETMAK 123
Query: 182 HNCYQMVFSSSCTVYGEPEHLP 247
+NC MVFSSS TVYG+PE +P
Sbjct: 124 YNCKMMVFSSSATVYGQPEKIP 145
>At1g30620.1 68414.m03745 UDP-D-xylose 4-epimerase, putative (MUR4)
similar to SP|P55180 UDP-glucose 4-epimerase (EC
5.1.3.2) from Bacillus subtilis, GI:3021357
UDP-galactose 4-epimerase from Cyamopsis tetragonoloba;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family; contains TIGRfam profile
TIGR01179: UDP-glucose 4-epimerase
Length = 419
Score = 74.1 bits (174), Expect = 9e-14
Identities = 36/86 (41%), Positives = 52/86 (60%)
Frame = +3
Query: 510 TPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKA 689
T DGT +RDYI V DL HV AL ++ +YN+GTGKG SVKE V ++ T
Sbjct: 297 TADGTCVRDYIDVTDLVDAHVKALQKAKPR--KVGIYNVGTGKGSSVKEFVEACKKATGV 354
Query: 690 KVPLKYVDRRLGDISAMWADTSLAKK 767
++ + Y+ RR GD + +++D S +K
Sbjct: 355 EIKIDYLPRRAGDYAEVYSDPSKIRK 380
Score = 67.3 bits (157), Expect = 1e-11
Identities = 34/88 (38%), Positives = 47/88 (53%)
Frame = +2
Query: 2 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 181
F ADL D +N IF ++ D V+HFAA+ VGES L +LE M +
Sbjct: 126 FIYADLGDAKAVNKIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAA 185
Query: 182 HNCYQMVFSSSCTVYGEPEHLPITGLIP 265
H +++SS+C YGEP+ +PIT P
Sbjct: 186 HGVKTLIYSSTCATYGEPDIMPITEETP 213
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 280 NVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDP---TKEFTNLMPF 450
N YG+ K E+++ D S D ++ LRYFN +G+ P G +GE P +E +
Sbjct: 218 NPYGKAKKMAEDIILDFSKNSDM-AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGA 276
Query: 451 LAQVALGKKPVLTVFGTDY 507
A G P L + GTDY
Sbjct: 277 CFDAARGIMPGLQIKGTDY 295
>At2g34850.1 68415.m04279 NAD-dependent epimerase/dehydratase family
protein similar to UDP-galactose 4-epimerase from
Cyamopsis tetragonoloba GI:3021357, Lactococcus lactis
GI:3703056; contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 236
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/86 (39%), Positives = 51/86 (59%)
Frame = +3
Query: 510 TPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKA 689
T DGT +RDYI V DL HV AL ++ ++N+GTGKG SVKE V ++ T
Sbjct: 115 TVDGTCVRDYIDVTDLVDAHVKALEKAKPR--KVGIFNVGTGKGSSVKEFVEACKKATGV 172
Query: 690 KVPLKYVDRRLGDISAMWADTSLAKK 767
+ + Y++RR GD + +++D K+
Sbjct: 173 DIKVDYLERRAGDYAEVYSDPRKIKE 198
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 280 NVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFT---NLMPF 450
N YG+ K E+++ D S + ++ LRYFN +G+ P G +GE P E + +
Sbjct: 36 NPYGKAKKMAEDIILDFSK-NSIMAVMILRYFNVIGSDPEGRLGEAPRPELSEHGRISGA 94
Query: 451 LAQVALGKKPVLTVFGTDY 507
A G P L + GTDY
Sbjct: 95 CFDAARGIIPGLQIKGTDY 113
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 173 MRSHNCYQMVFSSSCTVYGEPEHLPITGLIP 265
M +H +++SS+C YGEPE +PIT P
Sbjct: 1 MAAHGVKTLIYSSTCATYGEPEKMPITEETP 31
>At5g44480.1 68418.m05450 NAD-dependent epimerase/dehydratase family
protein similar to SP|P55180 UDP-glucose 4-epimerase (EC
5.1.3.2) from Bacillus subtilis, GI:3021357
UDP-galactose 4-epimerase from Cyamopsis tetragonoloba;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 436
Score = 68.9 bits (161), Expect = 3e-12
Identities = 35/87 (40%), Positives = 52/87 (59%)
Frame = +3
Query: 510 TPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKA 689
T DGT IRDYI V DL HV AL ++ +YN+GTGKG SVKE V ++ T
Sbjct: 321 TSDGTCIRDYIDVTDLVDAHVKALEKAQPR--KVGIYNVGTGKGRSVKEFVEACKKATGV 378
Query: 690 KVPLKYVDRRLGDISAMWADTSLAKKN 770
++ + ++ RR GD + +++D + K+
Sbjct: 379 EIKVDFLPRRPGDYAEVYSDPTKILKD 405
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/84 (39%), Positives = 45/84 (53%)
Frame = +2
Query: 2 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 181
F ADL D + IF ++ D V+HFAA+ VGES L +LE M
Sbjct: 150 FIYADLGDPLAVEKIFSENAFDAVMHFAAVAYVGESTLYPLKYYHNITSNTLGVLEAMAR 209
Query: 182 HNCYQMVFSSSCTVYGEPEHLPIT 253
H ++++SS+C YGEPE +PIT
Sbjct: 210 HKVKKLIYSSTCATYGEPEKMPIT 233
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 280 NVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDPTKEFT---NLMPF 450
N YG+ K E+M+ D S D ++ LRYFN +G+ P G +GE P E +
Sbjct: 242 NPYGKAKKMAEDMILDFSKNSDM-AVMILRYFNVIGSDPGGRLGEAPRPELREQGRISGA 300
Query: 451 LAQVALGKKPVLTVFGTDY 507
A G P L V GTDY
Sbjct: 301 CFDAARGFIPGLQVKGTDY 319
>At4g20460.1 68417.m02985 NAD-dependent epimerase/dehydratase family
protein similar to UDP-galactose 4-epimerase from
Cyamopsis tetragonoloba GI:3021357 [EMBL:AJ005082],
Bacillus subtilis SP|P55180; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 379
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Frame = +3
Query: 510 TPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKA 689
T DGT +RDYI V DL HV AL ++ +YN+GTGKG SVKE V ++ T
Sbjct: 264 TGDGTCVRDYIDVTDLVDAHVKALEKAKPRNVG--IYNVGTGKGRSVKEFVEACKKATGV 321
Query: 690 KVPLKYVDRRLGDISAMWAD 749
+ + ++ RR GD + +++D
Sbjct: 322 DIKVDFLPRRPGDYAEVYSD 341
Score = 64.5 bits (150), Expect = 7e-11
Identities = 31/88 (35%), Positives = 47/88 (53%)
Frame = +2
Query: 2 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 181
F ADL D ++ IF ++ D V+HFAA+ VGES L +LE +
Sbjct: 93 FIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAVAR 152
Query: 182 HNCYQMVFSSSCTVYGEPEHLPITGLIP 265
H ++++SS+C YGEP+ +PI + P
Sbjct: 153 HKVKKLIYSSTCATYGEPDKMPIVEVTP 180
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 280 NVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVGAHPSGLIGEDP---TKEFTNLMPF 450
N YG+ K E+M+ D S D ++ LRYFN +G+ P G +GE P +E +
Sbjct: 185 NPYGKAKKMAEDMILDFSKNSDM-AVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGA 243
Query: 451 LAQVALGKKPVLTVFGTDY 507
A G P L V GTDY
Sbjct: 244 CFDAARGVIPGLQVKGTDY 262
>At2g45310.1 68415.m05639 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 437
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Frame = +3
Query: 519 GTGIRDYIHVMDLASGHVAALNLLSQT---------HIRLKVYNLGTGKGVSVKELVNVF 671
GT RD+ ++ D+ G +AAL+ ++ +L+V+NLG V V +LV +
Sbjct: 311 GTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRIL 370
Query: 672 ERVTKAKVPLKYVDR-RLGDISAMWADTSLAKK 767
ER K K + R GD+ A+ SLA++
Sbjct: 371 ERQLKVKAKKNLIKMPRNGDVPFTHANISLAQR 403
Score = 32.7 bits (71), Expect = 0.28
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 KADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHN 187
+ D+ D + +F V+H AA V +M G +NLLEI +S N
Sbjct: 154 EGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLLEICKSVN 213
Query: 188 CY-QMVFSSSCTVYGEPEHLPIT 253
+V++SS +VYG +P +
Sbjct: 214 PQPAIVWASSSSVYGLNTKVPFS 236
>At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam
profile: PF01370 NAD dependent epimerase/dehydratase
family
Length = 460
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 8 KADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHN 187
+ DL D P + +FD P ++H AA V +M G +NLLE+ ++ N
Sbjct: 169 EGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAAN 228
Query: 188 CY-QMVFSSSCTVYG 229
+V++SS +VYG
Sbjct: 229 PQPAIVWASSSSVYG 243
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Frame = +3
Query: 531 RDYIHVMDLASGHVAALNLLSQT---------HIRLKVYNLGTGKGVSVKELVNVFERV- 680
RD+ ++ D+ G V AL+ ++ +L+VYNLG V V LV++ E +
Sbjct: 330 RDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLL 389
Query: 681 -TKAKVPLKYVDRRLGDISAMWADTSLAKKN 770
TKAK L + R GD+ A+ SLA K+
Sbjct: 390 GTKAKKHLIKMPRN-GDVPYTHANVSLAYKD 419
>At4g00110.1 68417.m00011 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 430
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 KADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHN 187
+ D+ D + +F+ P V+H AA V +M G +NLLE+ +S N
Sbjct: 148 EGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLLEVCKSAN 207
Query: 188 CY-QMVFSSSCTVYGEPEHLPIT 253
+V++SS +VYG +P +
Sbjct: 208 PQPAIVWASSSSVYGLNTKVPFS 230
>At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 429
Score = 37.5 bits (83), Expect = 0.010
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 KADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHN 187
+ DL D + +FD V+H AA V ++ G++NLLEI ++ N
Sbjct: 145 EGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHSNIAGLVNLLEICKAAN 204
Query: 188 CY-QMVFSSSCTVYGEPEHLPIT 253
+V++SS +VYG E +P +
Sbjct: 205 PQPAIVWASSSSVYGLNEKVPFS 227
>At4g12250.1 68417.m01942 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 436
Score = 37.5 bits (83), Expect = 0.010
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Frame = +3
Query: 510 TPD-GTGIRDYIHVMDLASGHVAALNLLSQTH---------IRLKVYNLGTGKGVSVKEL 659
+PD G+ RD+ ++ D+ G + AL+ ++ ++YNLG V V +L
Sbjct: 306 SPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKL 365
Query: 660 VNVFERVTKAKVPLKYVD-RRLGDISAMWADTSLAK 764
V + E++ K K K + R GD+ A+ +LA+
Sbjct: 366 VTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQ 401
Score = 35.5 bits (78), Expect = 0.039
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 KADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHN 187
+ D+ D + +FD V+H AA V +M G +NLLE+ +S N
Sbjct: 153 EGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYAMQNPGSYVNSNIAGFVNLLEVSKSAN 212
Query: 188 CY-QMVFSSSCTVYGEPEHLPIT 253
+V++SS +VYG +P +
Sbjct: 213 PQPAIVWASSSSVYGLNSKVPFS 235
>At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 434
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 KADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHN 187
+ D+ D + +F+ P V+H AA V +M G +NLLE+ +S N
Sbjct: 149 EGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSAN 208
Query: 188 CY-QMVFSSSCTVYGEPEHLPIT 253
+V++SS +VYG +P +
Sbjct: 209 PQPAIVWASSSSVYGLNTKVPFS 231
>At1g73250.1 68414.m08477
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1) identical to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 323
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +3
Query: 519 GTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERV 680
G+ +R+++HV DLA V L+ S L+ N+G+G+ V+++EL + + V
Sbjct: 218 GSPLREFLHVDDLADACVFLLDRYS----GLEHVNIGSGQEVTIRELAELVKEV 267
>At1g17890.3 68414.m02214
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase,
putative similar to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 320
Score = 31.9 bits (69), Expect = 0.48
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +3
Query: 441 HAIPRASCSRQETCAHRFRNRLHTPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVY 620
H +P E A+ + G+ +R+++HV DLA A + L+ Q + +
Sbjct: 187 HVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLAD---ACVFLMDQ-YSGFEHV 242
Query: 621 NLGTGKGVSVKELVNVFERVTKAK 692
N+G+G V++KEL + + V K
Sbjct: 243 NVGSGVEVTIKELAELVKEVVGFK 266
>At1g17890.2 68414.m02213
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase,
putative similar to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 320
Score = 31.9 bits (69), Expect = 0.48
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +3
Query: 441 HAIPRASCSRQETCAHRFRNRLHTPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVY 620
H +P E A+ + G+ +R+++HV DLA A + L+ Q + +
Sbjct: 187 HVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLAD---ACVFLMDQ-YSGFEHV 242
Query: 621 NLGTGKGVSVKELVNVFERVTKAK 692
N+G+G V++KEL + + V K
Sbjct: 243 NVGSGVEVTIKELAELVKEVVGFK 266
>At1g17890.1 68414.m02215
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase,
putative similar to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 328
Score = 31.9 bits (69), Expect = 0.48
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +3
Query: 441 HAIPRASCSRQETCAHRFRNRLHTPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVY 620
H +P E A+ + G+ +R+++HV DLA A + L+ Q + +
Sbjct: 195 HVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLAD---ACVFLMDQ-YSGFEHV 250
Query: 621 NLGTGKGVSVKELVNVFERVTKAK 692
N+G+G V++KEL + + V K
Sbjct: 251 NVGSGVEVTIKELAELVKEVVGFK 274
>At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 669
Score = 31.1 bits (67), Expect = 0.84
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +3
Query: 516 DGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSV----KELVNVFERVT 683
DG+ +R Y++ D+A L+ H VYN+GT K V K++ +F
Sbjct: 218 DGSNVRSYLYCEDVAEAFEVVLHKGEVGH----VYNIGTKKERRVNDVAKDICKLFNMDP 273
Query: 684 KAKVPLKYVDRRLGDISAMWADTSLAKK 767
+A + K+VD R + + D KK
Sbjct: 274 EANI--KFVDNRPFNDQRYFLDDQKLKK 299
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMR- 178
F K D+ +N + +D ++HFAA V S G LLE +
Sbjct: 61 FVKGDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 120
Query: 179 SHNCYQMVFSSSCTVYGEPEHLPITG 256
+ + + S+ VYGE + + G
Sbjct: 121 TGQIRRFIHVSTDEVYGETDEDALVG 146
>At3g15370.1 68416.m01949 expansin, putative (EXP12) similar to
expansin GI:11191999 from [Lycopersicon esculentum];
alpha-expansin gene family, PMID:11641069
Length = 252
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 114 SNPYYTTRTTCLGCSTYWR*CDHTIATKWCSRRHAQSTANLNTCRSRDSSHW 269
S + + +C GC Y CD KWC R A + N C + +++ W
Sbjct: 66 SGELFRSGESCGGC--YQVRCDFPADPKWCLRGAAVTVTATNFCPTNNNNGW 115
>At2g33630.1 68415.m04123 3-beta hydroxysteroid
dehydrogenase/isomerase family protein contains Pfam
profile PF01073 3-beta hydroxysteroid
dehydrogenase/isomerase domain; similar to
NAD(P)-dependent cholesterol dehydrogenase [Nocardia
sp.] [GI:216809]
Length = 480
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +2
Query: 8 KADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHN 187
+ D+ K ++ D DCV+H A+ G+ M G N+LE H
Sbjct: 63 QGDVTKKQDVDNALDG--ADCVLHLASYGMSGKEMLRFGRCDEVNINGTCNVLEAAFKHE 120
Query: 188 CYQMVFSSSC-TVYGEPEHL 244
++V+ S+ V+G E L
Sbjct: 121 ITRIVYVSTYNVVFGGKEIL 140
>At4g33360.1 68417.m04743 terpene cyclase/mutase-related low
similarity to squalene-hopene cyclase from Zymomonas
mobilis [SP|P33990]
Length = 344
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 489 RFRNRL--HTPDGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELV 662
RF RL + GT + HV D+ GHVAA+ RL L TG+ S K +
Sbjct: 200 RFNGRLPGYIGSGTDRYSFSHVDDVVEGHVAAME-----KGRLGERYLLTGENASFKLVF 254
Query: 663 NVFERVTKAKVP 698
++ +T K P
Sbjct: 255 DMAALITGTKKP 266
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +2
Query: 2 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMR- 178
F K D+ +N + +D ++HFAA V S G LLE +
Sbjct: 61 FVKGDIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 120
Query: 179 SHNCYQMVFSSSCTVYGEPE 238
+ + + S+ VYGE +
Sbjct: 121 TGQIRRFIHVSTDEVYGETD 140
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +3
Query: 516 DGTGIRDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERV--TKA 689
DG+ +R Y++ D+A L+ H VYN+GT + V ++ N ++
Sbjct: 218 DGSNVRSYLYCEDVAEAFEVVLHKGEVNH----VYNIGTTRERRVIDVANDISKLFGIDP 273
Query: 690 KVPLKYVDRRLGDISAMWADTSLAKK 767
++YV+ R + + D KK
Sbjct: 274 DSTIQYVENRPFNDQRYFLDDQKLKK 299
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +1
Query: 409 GEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYTLPMELVFEI 537
G P E TNL+ LAQV +K VL+ GT Y ++ VF I
Sbjct: 494 GHTPRNEDTNLLQSLAQVQTPRKVVLS--GTLYQNHVKEVFNI 534
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +2
Query: 2 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMR- 178
F K D+ +N + +D ++HFAA V S G LLE +
Sbjct: 63 FVKGDIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 122
Query: 179 SHNCYQMVFSSSCTVYGEPE 238
+ + + S+ VYGE +
Sbjct: 123 TGQIRRFIHVSTDEVYGETD 142
>At1g17455.1 68414.m02138 expressed protein
Length = 114
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +3
Query: 531 RDYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKAKVPLKYV 710
+ ++ V D+ + +N ++Q H + NLG G+ +KEL N RV L +
Sbjct: 25 KSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGL-IKELNNNIRRVASLYGDLSHS 83
Query: 711 DRRLGDISA 737
R D S+
Sbjct: 84 FARSVDASS 92
>At3g52310.1 68416.m05749 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 737
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 440 SCHSSRKLLSARNLCSPFSEPTTHSRWNWYSR 535
S H S++ + AR L SP + +RWN + R
Sbjct: 35 SSHGSKQHVRARTLSSPSYSSNSKNRWNTHIR 66
>At2g43620.1 68415.m05422 chitinase, putative similar to basic
endochitinase CHB4 precursor SP:Q06209 from [Brassica
napus]
Length = 283
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 34 NQCYFRQASCGLRDPFCGTQSSWGIDAATLIILPEQPAWDA 156
N C R CG D +CGT G +++ +P P+ A
Sbjct: 39 NLCCSRYGYCGTTDAYCGTGCRSGPCSSSTTPIPPTPSGGA 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,051,681
Number of Sequences: 28952
Number of extensions: 394088
Number of successful extensions: 1183
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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