Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00807
         (760 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    24   1.1  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   2.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   8.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.1  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 688 VQAKKALNPVITKIEMVGGW 629
           V+A K +NP +  I  +GGW
Sbjct: 86  VEALKEINPNLKTIISIGGW 105


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 218 YLHTYNLCKLQYFCQASPWCVILILIAIVLT 126
           YL  Y+  K + FC+   + +I I +  +LT
Sbjct: 25  YLKIYHKEKYRKFCRILKYFIIAIYVLTILT 55


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 688 VQAKKALNPVITKIEMVGGW 629
           +Q  K  NP +  +  +GGW
Sbjct: 151 IQKLKKANPSLKTLLAIGGW 170


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 192 VTILLSGIALVCHSHIDSHCTY 127
           V +LLSG+  +C  +    C++
Sbjct: 170 VPVLLSGLIAMCGMYYRDECSF 191


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 192 VTILLSGIALVCHSHIDSHCTY 127
           V +LLSG+  +C  +    C++
Sbjct: 403 VPVLLSGLIAMCGMYYRDECSF 424


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 192 VTILLSGIALVCHSHIDSHCTY 127
           V +LLSG+  +C  +    C++
Sbjct: 403 VPVLLSGLIAMCGMYYRDECSF 424


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,986
Number of Sequences: 336
Number of extensions: 4403
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)