Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00807
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    64   2e-11
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    64   2e-11
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   3.8  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.8  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.8  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   8.9  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.9  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.9  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 26/37 (70%), Positives = 35/37 (94%)
 Frame = +3

Query: 15  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNS 125
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NS
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANS 37


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 26/37 (70%), Positives = 35/37 (94%)
 Frame = +3

Query: 15  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNS 125
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NS
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANS 37


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -1

Query: 502 LTNFRTSIIY*AFKIWH*HHNILSYIGVNLVRNSTFCVGITKKIARQEF*G 350
           + NF T+I Y    +W+  H++ +  G N++ N  +   + K+I +++  G
Sbjct: 189 INNF-TNITYLRDNVWNLEHSVFAPHGDNVIENLNYYNDLRKEIDQKKHAG 238


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -1

Query: 502 LTNFRTSIIY*AFKIWH*HHNILSYIGVNLVRNSTFCVGITKKIARQEF*G 350
           + NF T+I Y    +W+  H++ +  G N++ N  +   + K+I +++  G
Sbjct: 189 INNF-TNITYLRDNVWNLEHSVFAPHGDNVIENLNYYNDLRKEIDQKKHAG 238


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 134 VLTGVGVCDLIDFIWIQPHLLFTTSHNRGCK 42
           VL+ +    ++D  +  PHLL  +S N+ CK
Sbjct: 238 VLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -1

Query: 235 LICTLFIYTLTIYVSYNTSVRHRPGVSFSY**PLYLLELVFAISLISFGSNHTFFLPHRI 56
           L+   F      Y +Y T+V HR G+ FS          +  + L  F ++  +F+P+  
Sbjct: 163 LLSICFFVGAAFYTAYTTNVTHR-GIGFSL--IFSPFAALTRLYLARFLNSPQYFIPYG- 218

Query: 55  TEAASLFCSL 26
           T  A++F +L
Sbjct: 219 TLCANVFATL 228


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -1

Query: 235 LICTLFIYTLTIYVSYNTSVRHRPGVSFSY**PLYLLELVFAISLISFGSNHTFFLPHRI 56
           L+   F      Y +Y T+V HR G+ FS          +  + L  F ++  +F+P+  
Sbjct: 163 LLSICFFVGAAFYTAYTTNVTHR-GIGFSL--IFSPFAALTRLYLARFLNSPQYFIPYG- 218

Query: 55  TEAASLFCSL 26
           T  A++F +L
Sbjct: 219 TLCANVFATL 228


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 343 NGIFRRQSTDAQRQSKENTSKSFAK 269
           + I +++  +AQ+  K+N SKSF+K
Sbjct: 51  SAILQQKHENAQQGKKQNNSKSFSK 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,107
Number of Sequences: 5004
Number of extensions: 66767
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)