Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00807
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...    65   5e-11
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...    64   1e-10
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576...    29   4.0  
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363...    29   4.0  
01_06_1295 - 36082438-36082695,36082818-36082976                       29   4.0  
04_04_1546 - 34301905-34302093,34302549-34302911,34303031-343034...    28   7.0  
02_05_0563 + 29998291-29998753,29999256-29999468,29999550-299996...    28   9.3  

>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 29/37 (78%), Positives = 33/37 (89%)
 Frame = +3

Query: 15  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNS 125
           M SLKLQKRLAASV++CGK KVWLDPNE+NEI+  NS
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANS 37


>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = +3

Query: 15  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNS 125
           M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+  NS
Sbjct: 1   MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANS 37


>11_06_0557 -
           24955837-24956214,24957225-24957395,24957576-24957635,
           24958419-24958623,24958710-24958953,24959103-24959394,
           24959734-24960828,24960915-24961409,24961665-24961823,
           24961893-24962387
          Length = 1197

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 632 LDLYYKAKFLHHDDDQSCLK 573
           LD+Y + K +HHD+D +C K
Sbjct: 535 LDMYCRKKCVHHDEDLTCNK 554


>03_06_0658 -
           35335639-35335731,35335814-35335871,35336213-35336355,
           35336624-35336703,35336916-35337075,35337531-35337668,
           35338487-35338567,35338640-35338693,35339192-35339297,
           35339615-35339682,35340076-35340225,35340401-35340519,
           35341151-35341362,35342118-35342205,35342365-35342479,
           35343083-35343274,35343809-35344018
          Length = 688

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -3

Query: 134 VLTGVGVCDLIDFIWIQPHLLFTTSHNRGCKPLLQLEGTHPDTV 3
           VL   G  D  D  WI PH    T  +R C  +L LEG   DT+
Sbjct: 519 VLDQEGWFDTGDIGWIAPHC--PTGPSRKCGGMLVLEGRAKDTI 560


>01_06_1295 - 36082438-36082695,36082818-36082976
          Length = 138

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 305 PLGISALSSKNSITRPLKLLPSYFFCNTYTKSRISHQIYTN 427
           PLG+ A++++  +TR + L  S  F   +T S  +   +T+
Sbjct: 7   PLGLGAMNARAGVTRSVDLSGSASFSTAFTSSHCASSSFTS 47


>04_04_1546 -
           34301905-34302093,34302549-34302911,34303031-34303471,
           34304331-34304447,34304540-34304593
          Length = 387

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = +2

Query: 380 CNTYTKSRISHQIYTNVT*YVMMLVPNFKSLIYNTCSKICQVVPKNKSPGIIVLSSDLTV 559
           C T     I HQ Y     +   L  +F  +  N    +  V+P  ++P  + +   +  
Sbjct: 46  CRTAVHQGIGHQTYAESRGHNFALNASFDEVNINEYDGL--VIPGGRAPEYLAMDEKVLD 103

Query: 560 LIFKFSD 580
           L+ KFSD
Sbjct: 104 LVRKFSD 110


>02_05_0563 +
           29998291-29998753,29999256-29999468,29999550-29999667,
           30000227-30000355,30000438-30000810,30000890-30001147,
           30001192-30001227
          Length = 529

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 503 VVPKNKSPGIIVLSSDLTVLIFKFSDKTDHH-HDEGISPCNTNPTTNHFNFS 655
           +V ++  PG I+L  + TV +  F    +HH H   I    T+   + F+FS
Sbjct: 344 IVHRDVKPGNILLEENFTVKLADFGIGMNHHLHMFNIIQVTTDADNSVFSFS 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,721,511
Number of Sequences: 37544
Number of extensions: 384924
Number of successful extensions: 825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)