Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00807
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)               69   5e-12
SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 29   3.1  
SB_9414| Best HMM Match : 7tm_1 (HMM E-Value=0.051)                    29   4.1  
SB_8843| Best HMM Match : SpdB (HMM E-Value=4)                         28   9.5  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 28/40 (70%), Positives = 36/40 (90%)
 Frame = +3

Query: 6   RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNS 125
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NS
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANS 65


>SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 468

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 152 E*HTRAMPDRSIVTYINCKCVNKQSAN*IFFCQVNPG-RNFGK*LTRIFFRL 304
           E HTR + +R I+  +N KC   +    +FF +V  G R+F      I+ +L
Sbjct: 5   EIHTRVLSERKIINLVN-KCSFNREGPYLFFIEVKTGNRHFASTDVPIYIKL 55


>SB_9414| Best HMM Match : 7tm_1 (HMM E-Value=0.051)
          Length = 334

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 218 YLHTYNLCKLQYFCQASPWCVILILIAIVLTGVGVCDLIDFIWIQPHLLFTTSHNRG 48
           Y   Y  C LQY+C      V+L LIA +          + +W++P L+      RG
Sbjct: 158 YPFLYLNCGLQYYCTGHVTAVVLTLIAAI--------SFNMLWVKPKLVALKIDGRG 206


>SB_8843| Best HMM Match : SpdB (HMM E-Value=4)
          Length = 825

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = -1

Query: 574 KFENQHGQIT**DYYTWRLILGHNLTN----FRTSIIY*AFKIWH*HHNILSYIGVNLVR 407
           K+    G  T  DY  +R I+GHN  N    +RT+I +     +  +  I+ +  +N  R
Sbjct: 359 KYRTIIGHTTINDYRKYRTIIGHNTINDYRKYRTTIGHTNINDYRKYRTIIGHTTINDYR 418

Query: 406 NSTFCVGIT 380
                +G T
Sbjct: 419 KYRTIIGHT 427



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = -1

Query: 574 KFENQHGQIT**DYYTWRLILGHNLTN----FRTSIIY*AFKIWH*HHNILSYIGVNLVR 407
           K+    G  T  DY  +R I+GHN  N    +RT+I +     +  +  I+ +  +N  R
Sbjct: 584 KYRTIIGHTTINDYRKYRTIIGHNTINDYRKYRTTIGHTNINDYRKYRTIIGHTTINDYR 643

Query: 406 NSTFCVGIT 380
                +G T
Sbjct: 644 KYRTIIGHT 652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,596,384
Number of Sequences: 59808
Number of extensions: 480547
Number of successful extensions: 1145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)