Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00807
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...    61   1e-09
AC024751-9|AAK21508.2|  677|Caenorhabditis elegans Pif1p dna hel...    29   2.7  
AB015041-1|BAA28677.1|  677|Caenorhabditis elegans PIF1 protein.       29   2.7  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 24/37 (64%), Positives = 34/37 (91%)
 Frame = +3

Query: 15  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNS 125
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NS
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANS 37


>AC024751-9|AAK21508.2|  677|Caenorhabditis elegans Pif1p dna
           helicase (yeast) homologprotein 1 protein.
          Length = 677

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 102 NEIANTNSSKYNGYQYENDTPGRCLTEVL 188
           ++I       + G++YEN TP +CL +VL
Sbjct: 301 SQIGGITLHAFCGFRYENSTPEQCLKQVL 329


>AB015041-1|BAA28677.1|  677|Caenorhabditis elegans PIF1 protein.
          Length = 677

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 102 NEIANTNSSKYNGYQYENDTPGRCLTEVL 188
           ++I       + G++YEN TP +CL +VL
Sbjct: 301 SQIGGITLHAFCGFRYENSTPEQCLKQVL 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,743,929
Number of Sequences: 27780
Number of extensions: 373713
Number of successful extensions: 946
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)