Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00807
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.19 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    24   1.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    24   1.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.1  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   5.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.2  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = -1

Query: 445 HNILSYIGVNLVRNSTFCVGI----TKKIARQEF*GPGNGIFRRQSTDAQRQSKENTSKS 278
           HNI S +G  L+ ++ FCVG+     +++ R  F G    I  R   +   +   N   +
Sbjct: 2   HNICSRLGRILLISAVFCVGLCSEDEERLVRDLFRGYNKLI--RPVQNMTEKVHVNFGLA 59

Query: 277 FAKISTRINLTKKNLICTLFIYTLTIYVSY 188
           F ++   IN+ +KN I    ++   I+  Y
Sbjct: 60  FVQL---INVNEKNQIMKSNVWLRFIWTDY 86



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 133 YLLELVFAISLISFGSNHTFFLPHRITEAASLFCSL 26
           Y + L+    LISF     F+LP    E  +L  S+
Sbjct: 236 YTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISI 271


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 235 LICTLFIYTLTIYVSYNTSVRHR 167
           ++C LFIYT+T       S R R
Sbjct: 10  IVCALFIYTVTAETEEGQSGRSR 32


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 235 LICTLFIYTLTIYVSYNTSVRHR 167
           ++C LFIYT+T       S R R
Sbjct: 10  IVCALFIYTVTAETEEGQSGRSR 32


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 11  QDEFPQAAEEACSLCYAMW*KEG 79
           +DEF +  +  CSLC   + ++G
Sbjct: 263 EDEFDEFGDSKCSLCQRRFEEQG 285


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 84  LDPNEINEIANTNSSKYNGYQYEND 158
           L    I+   N N++ YN Y Y N+
Sbjct: 85  LSNKTIHNNNNYNNNNYNNYNYNNN 109


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 620 NTNPTTNHFNFSN 658
           N NP +N++N++N
Sbjct: 84  NNNPLSNNYNYNN 96


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 93  NEINEIANTNSSKYNGYQYENDTPGRC 173
           N  N   N N++ YN   Y N+    C
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNC 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,970
Number of Sequences: 438
Number of extensions: 4972
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)