Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00807
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...    61   7e-10
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...    60   2e-09
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...    60   2e-09
At4g27040.1 68417.m03888 expressed protein                             31   1.1  
At3g25655.1 68416.m03193 expressed protein                             29   3.4  
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil...    28   7.7  

>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = +3

Query: 15  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNS 125
           M SLKLQKRLAASVM+CGK KVWLDPNE ++I+  NS
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANS 37


>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 27/37 (72%), Positives = 31/37 (83%)
 Frame = +3

Query: 15  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNS 125
           M SLK+QKRLAASVM+CGK KVWLDPNE  +I+  NS
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANS 37


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 26/37 (70%), Positives = 33/37 (89%)
 Frame = +3

Query: 15  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNS 125
           M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+  NS
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANS 37


>At4g27040.1 68417.m03888 expressed protein
          Length = 250

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 189 TILLSGIALVCHSHIDSHCTYWSWCLRS 106
           T+L  G+A++ + H D  C YW  C+ S
Sbjct: 214 TLLEEGLAMIDNGHKDGKCRYWFPCVSS 241


>At3g25655.1 68416.m03193 expressed protein
          Length = 86

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 256 INLTKKNLICTLFIYTLTIYVSYNTSVRHRP 164
           +NL+ K +  TL+I  L I+ SYN + R  P
Sbjct: 1   MNLSHKTMFMTLYIVFLLIFGSYNATARIGP 31


>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
           to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
           {Homo sapiens}; contains Pfam profile PF02127:
           Aminopeptidase I zinc metalloprotease (M18)
          Length = 526

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 91  GSNHTFFLPHRITEAASLFCSLRELI 14
           G+N+ F    R+   AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,411,175
Number of Sequences: 28952
Number of extensions: 336030
Number of successful extensions: 762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)