Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00806
         (740 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8NCE0 Cluster: tRNA-splicing endonuclease subunit Sen2...    40   0.049
UniRef50_Q08BW3 Cluster: Zgc:154067; n=4; Danio rerio|Rep: Zgc:1...    40   0.064
UniRef50_UPI00015B5AC7 Cluster: PREDICTED: hypothetical protein;...    40   0.085
UniRef50_Q6P7W5 Cluster: tRNA-splicing endonuclease subunit Sen2...    36   1.0  
UniRef50_Q54RX5 Cluster: Putative uncharacterized protein; n=1; ...    36   1.4  
UniRef50_UPI0001554D00 Cluster: PREDICTED: similar to TSEN2 prot...    34   4.2  
UniRef50_Q5E7H9 Cluster: TadG-like protein; n=1; Vibrio fischeri...    34   4.2  
UniRef50_Q9P6Y2 Cluster: Probable tRNA-splicing endonuclease sub...    34   4.2  
UniRef50_Q6MQX1 Cluster: Naringenin-chalcone synthase; n=1; Bdel...    33   5.6  
UniRef50_Q017H3 Cluster: Putative RIO kinase 2; n=1; Ostreococcu...    33   5.6  
UniRef50_Q0HNF6 Cluster: Putative uncharacterized protein; n=1; ...    33   7.4  
UniRef50_Q757G9 Cluster: AER044Wp; n=1; Eremothecium gossypii|Re...    33   7.4  
UniRef50_Q6FRH2 Cluster: Autophagy-related protein 11; n=1; Cand...    33   7.4  
UniRef50_Q17LU6 Cluster: Bap28; n=1; Aedes aegypti|Rep: Bap28 - ...    33   9.7  

>UniRef50_Q8NCE0 Cluster: tRNA-splicing endonuclease subunit Sen2;
           n=5; Catarrhini|Rep: tRNA-splicing endonuclease subunit
           Sen2 - Homo sapiens (Human)
          Length = 465

 Score = 40.3 bits (90), Expect = 0.049
 Identities = 22/44 (50%), Positives = 25/44 (56%)
 Frame = +3

Query: 378 IFTGYYNGYNVEVRSPEEITLLYHMGCFGKGSASRSRPALVNSD 509
           IF       NV VR+ E+I  LY  G FGKG  SRSRP+   SD
Sbjct: 39  IFRAEMINNNVIVRNAEDIEQLYGKGYFGKGILSRSRPSFTISD 82


>UniRef50_Q08BW3 Cluster: Zgc:154067; n=4; Danio rerio|Rep:
           Zgc:154067 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 438

 Score = 39.9 bits (89), Expect = 0.064
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = +3

Query: 399 GYNVEVRSPEEITLLYHMGCFGKGSASRSRP 491
           G++V V  P  I  LYH G FGKG  SRSRP
Sbjct: 45  GHHVSVTDPAHIQQLYHRGYFGKGVFSRSRP 75


>UniRef50_UPI00015B5AC7 Cluster: PREDICTED: hypothetical protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
           protein - Nasonia vitripennis
          Length = 468

 Score = 39.5 bits (88), Expect = 0.085
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 414 VRSPEEITLLYHMGCFGKGSASRSRP 491
           +  P E+ ++Y MGCFGKGS SRS P
Sbjct: 46  IADPTEMEIVYKMGCFGKGSLSRSHP 71


>UniRef50_Q6P7W5 Cluster: tRNA-splicing endonuclease subunit Sen2;
           n=24; Tetrapoda|Rep: tRNA-splicing endonuclease subunit
           Sen2 - Mus musculus (Mouse)
          Length = 460

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = +3

Query: 378 IFTGYYNGYNVEVRSPEEITLLYHMGCFGKGSASRSRP 491
           IF       NV VR  E++  LY  G FGKG  SRSRP
Sbjct: 39  IFQAEMISNNVVVRGTEDMEQLYGKGYFGKGILSRSRP 76


>UniRef50_Q54RX5 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 432

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 23/70 (32%), Positives = 31/70 (44%)
 Frame = +3

Query: 294 NCQTNDLNDLFPMSIESLRFPLDNSIQIIFTGYYNGYNVEVRSPEEITLLYHMGCFGKGS 473
           N   N+ N     S++ L    D      + G Y GY V++   E+   LY  G +GKG 
Sbjct: 19  NNNNNNNNSFDATSVKQLPTTSDELRYKHYFGEYLGYGVKIIDYEQGLDLYKHGSYGKGI 78

Query: 474 ASRSRPALVN 503
            SRS P   N
Sbjct: 79  LSRSFPIFDN 88


>UniRef50_UPI0001554D00 Cluster: PREDICTED: similar to TSEN2
           protein; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           similar to TSEN2 protein - Ornithorhynchus anatinus
          Length = 417

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +3

Query: 405 NVEVRSPEEITLLYHMGCFGKGSASRSRPALVNSD 509
           +V VR+ ++I  LY  G FGKG  SR RP    SD
Sbjct: 48  HVIVRNADDIEQLYRKGYFGKGILSRGRPDFSISD 82


>UniRef50_Q5E7H9 Cluster: TadG-like protein; n=1; Vibrio fischeri
           ES114|Rep: TadG-like protein - Vibrio fischeri (strain
           ATCC 700601 / ES114)
          Length = 465

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = +2

Query: 512 YPEIIRKRQYLQRNNWYKKFGDGGCTLVSSTLLKELDELSAKIVSDGEKLTKKDIIDLVS 691
           + +I+    +   N+  K F   G T     +++    +S  I +DGE+   K +I ++S
Sbjct: 289 FTDIMYTSDFASFNHKIKSFEAFGGTASLQGIIRASQIVSYHITNDGEEANPKQLIIILS 348

Query: 692 SDEEFSHDDVDTENAV 739
             E+F+H    TE  V
Sbjct: 349 DGEDFNHYLGQTETLV 364


>UniRef50_Q9P6Y2 Cluster: Probable tRNA-splicing endonuclease
           subunit sen-2; n=1; Neurospora crassa|Rep: Probable
           tRNA-splicing endonuclease subunit sen-2 - Neurospora
           crassa
          Length = 633

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 405 NVEVRSPEEITLLYHMGCFGKGSASRSRP 491
           +V V+ P+ I  L+  G +GKGS SRS P
Sbjct: 103 SVHVKDPKSIRALWEQGFYGKGSLSRSEP 131


>UniRef50_Q6MQX1 Cluster: Naringenin-chalcone synthase; n=1;
           Bdellovibrio bacteriovorus|Rep: Naringenin-chalcone
           synthase - Bdellovibrio bacteriovorus
          Length = 369

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
 Frame = +3

Query: 312 LNDLFPMSIESLRFPLDNSIQIIFTGYYNGYNVE---VRSPEEITLL--YHMGCFGKGSA 476
           + +LF        FP D+ I +  TGY +    +   V++P+ +T+   YHMGC+G   A
Sbjct: 99  VKELFERIYAERTFP-DDLIHVSCTGYISPSAAQMTAVKAPKPVTVTHSYHMGCYGAFPA 157

Query: 477 SRSRPA-LVNSDVIQK 521
            R     L N +++ K
Sbjct: 158 LRMASGFLANENILGK 173


>UniRef50_Q017H3 Cluster: Putative RIO kinase 2; n=1; Ostreococcus
           tauri|Rep: Putative RIO kinase 2 - Ostreococcus tauri
          Length = 526

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 602 TLLKELDELSAKIVSDGEKLTKKDIIDLVSSDEEFSHDDVDTENAV 739
           T +KELD+ + + + DG   +    I+L+S DE  S D+ D    V
Sbjct: 316 TQMKELDDYNEQALGDGRSESSDRDIELLSEDESESDDEADEREEV 361


>UniRef50_Q0HNF6 Cluster: Putative uncharacterized protein; n=1;
           Shewanella sp. MR-4|Rep: Putative uncharacterized
           protein - Shewanella sp. (strain MR-4)
          Length = 294

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 614 ELDELSAKIVSDGEKLTKKDIIDLVSSDEEFSHDDV 721
           ELD L A+ + DGEKLT K++ ++ +  E  +   V
Sbjct: 51  ELDALQARKIIDGEKLTSKEVFEIYNIQESANKSSV 86


>UniRef50_Q757G9 Cluster: AER044Wp; n=1; Eremothecium gossypii|Rep:
           AER044Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 1103

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 14/39 (35%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
 Frame = +2

Query: 611 KELDELSAKIVSDGEKLTKKDI-IDLVSSDEEFSHDDVD 724
           K  +E+S KIV+  EK+T++++ I+   +D++ +H++VD
Sbjct: 309 KRQEEISQKIVACDEKITERNLKIERYKADQDSTHEEVD 347


>UniRef50_Q6FRH2 Cluster: Autophagy-related protein 11; n=1; Candida
           glabrata|Rep: Autophagy-related protein 11 - Candida
           glabrata (Yeast) (Torulopsis glabrata)
          Length = 1110

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 548 RNNWYKKFGDGGCTLVSS-TLLKELDELSAKIVSDGEKLTKKDIIDL 685
           R NWYK FG+         T   +LDE+S  + SD + L +K I DL
Sbjct: 472 RKNWYKNFGELSKPFNEDLTKYNDLDEISKLMNSDSQFLKEKFIQDL 518


>UniRef50_Q17LU6 Cluster: Bap28; n=1; Aedes aegypti|Rep: Bap28 -
           Aedes aegypti (Yellowfever mosquito)
          Length = 2079

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +2

Query: 572 GDGGCTLVSSTLLKELDELSAKIVSDGEKLTKKDIIDLVSSDE 700
           GDG C L+  ++ + L++ + ++V++  KL   D+I L+  DE
Sbjct: 522 GDGNCELLKDSVKERLNDDNWEVVAEVMKLDIGDLITLIGKDE 564


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,078,961
Number of Sequences: 1657284
Number of extensions: 14343125
Number of successful extensions: 37558
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 36018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37543
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)