Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00806
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    27   0.12 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.5  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   7.9  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 663 VNFSPSLTILADNSSNSFKRVLETSVHPPSPN 568
           +N++P      +N  +S KR    S HP SPN
Sbjct: 191 INYNPFAKGFRENGKSSAKRKQLVSEHPDSPN 222


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 136 LFYMTWNLVF*PNLYLFFTNF 74
           L Y T +L+F P +Y F++ F
Sbjct: 199 LDYFTLHLLFLPCIYYFYSAF 219


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 678 IMSFFVNFSPSLT 640
           +M  FVNF PS T
Sbjct: 285 VMKSFVNFRPSFT 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,311
Number of Sequences: 336
Number of extensions: 4185
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)