Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00806
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    27   2.1  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    26   6.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   6.5  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.5  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    26   6.5  
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   8.6  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    25   8.6  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   8.6  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   8.6  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   8.6  

>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 638 FWLTTHPILSKEYLKPVYIHHHQIFCTNCSFVNIAFSLLFLDNVTVY 498
           F +T  PIL   YLK   I    + C     VN+   +  + N+ V+
Sbjct: 689 FNITFPPILYGSYLKTSTISPFHLACIRFIVVNVGIGMAIVVNIVVF 735


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +2

Query: 557 WYKKFGDGGCTLVSSTLLKELDELSAKIVSDGEKLTKKDIIDLVSSDEEFSHDDVD 724
           W++          S  LLKE   L A   S G  L ++ + D + + + F  +  D
Sbjct: 110 WFQNLFPTDVVQRSKMLLKESGSLGAYSASQGIPLVRRHVADFIRARDGFDCEPSD 165


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 358 NGNRNDSIDIGNKSFKSLV 302
           NG+R D ID+ NK F+  V
Sbjct: 14  NGSREDQIDLANKLFRGEV 32


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 170 HK*VYLKFLFLFILYDLEFSLLAKSL 93
           H+ V+LKF  + +L+ L FSL   SL
Sbjct: 54  HQSVFLKFSLIVLLFSLMFSLTFGSL 79


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 627 NSSNSFKRVLETSVHPPSPNF 565
           ++ +S K+ LE+ +HP SPN+
Sbjct: 105 DAKSSLKQQLESLIHPTSPNW 125


>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 657 FSPSLT-ILADNSSNSFKRVLETSVHPPSPNFLYQLFLCK 541
           F P +T I+A   SN +   L     PP PN  Y+ ++ K
Sbjct: 62  FDPHVTCIVAYTDSNPYVGFLAFKKFPPDPNVSYRDWILK 101


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 85  KINKDLAKRLNSRSYKINKNKNFKYTY 165
           +I+KD  K L+     I+  K+FKY +
Sbjct: 120 RISKDSVKHLDKTYSSIDSKKDFKYNF 146


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 274 MTKELASPKFYLQPNVTIPLVNNAK 200
           +TKE+ + K Y   NV  PLV + K
Sbjct: 104 VTKEVRASKKYTSSNVEFPLVTDGK 128


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 599 LKPVYIHHHQIFCT-NCSFVNIAFSLLF 519
           ++P  +H    +C  NCS +++ F LLF
Sbjct: 183 IRPSKVHTEIQWCLQNCSLIHVPFELLF 210


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 414 VRSPEEITLLYHMGCFGKGSASRSRP 491
           V   E I   +  G FGKG+ SRS P
Sbjct: 62  VTDSEAIKKFWTSGFFGKGNLSRSEP 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,881
Number of Sequences: 5004
Number of extensions: 67275
Number of successful extensions: 194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)