Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00806
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0309 - 42655890-42656001,42656241-42656332,42656493-426565...    31   0.73 
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427...    30   2.2  
04_04_0188 - 23433753-23436572                                         29   5.1  
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789     29   5.1  
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124...    29   5.1  
01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232...    28   9.0  

>01_07_0309 -
           42655890-42656001,42656241-42656332,42656493-42656500,
           42658146-42658209,42658408-42658473,42658479-42658571
          Length = 144

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 645 LTILADNSSNSFKRVLETSVHPP-SPNFLYQLFLCKYCLFLIIS 517
           + IL+ +S  +  R  +    PP + NFL   FLCK C F++ S
Sbjct: 1   MAILSRSSCRTLARSPKYLFLPPCNANFLQMFFLCKLCKFVVFS 44


>12_02_0588 -
           20842209-20842337,20842464-20842560,20842620-20842733,
           20843140-20843749,20844739-20845462,20845542-20845620,
           20845783-20845865,20846148-20846226,20846332-20846420,
           20846499-20846591,20847288-20847337,20847417-20847600,
           20849227-20849542,20849626-20849657
          Length = 892

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/66 (22%), Positives = 35/66 (53%)
 Frame = -2

Query: 376 ICIELSNGNRNDSIDIGNKSFKSLV*QFSDCKVVMTKELASPKFYLQPNVTIPLVNNAKY 197
           +C++L NG R+++I++G ++ + +         V+++ L +P F    ++    +   K 
Sbjct: 793 LCLQLDNG-RSENIELGKRAIRLIAQSQLPATRVVSRPLQAPAFGSSQSLIHGRLGGLKR 851

Query: 196 VSLILT 179
           +  ILT
Sbjct: 852 IGFILT 857


>04_04_0188 - 23433753-23436572
          Length = 939

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 612 FKRVLETSVHPPSPNFLYQLFLCKY 538
           FKR+LET V P   +FL  L+ C +
Sbjct: 655 FKRMLETGVSPDHVSFLALLYACSH 679


>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
          Length = 877

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 590 LVSSTLLKEL--DELSAKIVSDGEKLTKKDIIDLVSSDEE 703
           LV+S  LKE   +E++  + +DGE    +DI D  SSD+E
Sbjct: 444 LVNSKKLKEQKKEEIAESLTTDGEGSGDEDISDEDSSDDE 483


>02_03_0176 +
           16010806-16011095,16011983-16012061,16012389-16012464,
           16012541-16012630,16012878-16013031,16013172-16013181,
           16013240-16013407,16014087-16014485,16014580-16014990
          Length = 558

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 318 DLFPMSIESLRFPLDNSIQIIFTG-YYNGYNVEV 416
           +L P+++  L   LDN +Q+I  G + +GY V V
Sbjct: 289 ELVPLTLSDLAASLDNDVQVIIDGKFEHGYIVTV 322


>01_06_1086 -
           34421837-34422311,34422426-34422612,34423162-34423291,
           34423485-34423720,34423804-34423961,34424048-34424128,
           34424216-34424281,34424364-34424432,34424722-34424866,
           34425645-34426138,34426244-34426811,34429529-34429574
          Length = 884

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +2

Query: 551 NNWYKKFGDGGCTLVSSTLLKELDELSAKIVSDGEKLTKKDIIDLVSSDEEFSHDDVDT 727
           NN+    G+GG   V   +L   +E++ K++ +  +   KD +  V +  +  H ++ T
Sbjct: 577 NNFQSIIGNGGFGTVYHGILGNGEEVAVKVLRETSRALSKDFLPEVQTLSKVHHKNLVT 635


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,836,687
Number of Sequences: 37544
Number of extensions: 360462
Number of successful extensions: 909
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)