Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00806
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_20475| Best HMM Match : DUF912 (HMM E-Value=2)                      29   4.0  
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)               29   4.0  
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/26 (46%), Positives = 22/26 (84%)
 Frame = +2

Query: 599 STLLKELDELSAKIVSDGEKLTKKDI 676
           +TLL E DE  A+++++GEKL+K+++
Sbjct: 359 TTLLSEKDEQIAELLAEGEKLSKQEL 384


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = -1

Query: 716 HHD*TLHRWILDLLCLFSL--TFHHH*QFWLTTHPILSKEYLKPVYIHHHQIFCTNCSFV 543
           HHD +LH +    +   SL    HHH    + T  IL        Y HHH  + T     
Sbjct: 282 HHDNSLHHFPYISIINISLKNRHHHHQHITIITVNILPSP--PSTYYHHHHHYIT----- 334

Query: 542 NIAFSLLFLDNVTVYKC 492
            IA ++L L   T Y C
Sbjct: 335 GIAINILPLLLSTYYHC 351


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 647 DGEKLTKKD--IIDLVSSDEEFSHDDVD 724
           DG   TK D  I D   SDE ++HDDVD
Sbjct: 374 DGSYATKDDAKIGDFKGSDENYNHDDVD 401


>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 476  LEVTTRTCKQ*-RYPEIIRKRQ-YLQRNNWYKK 568
            LE+ TR       YP  +RKR  YL   NWYKK
Sbjct: 998  LEIDTRPASSLGSYPVTLRKRTPYLPSTNWYKK 1030


>SB_20475| Best HMM Match : DUF912 (HMM E-Value=2)
          Length = 144

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/38 (26%), Positives = 26/38 (68%)
 Frame = -1

Query: 545 VNIAFSLLFLDNVTVYKCGS*PRGRSLPKTAHVIQKSN 432
           V +AF++ ++  + ++KCG    G++L  TA ++++++
Sbjct: 94  VGVAFAVGYIVRLVLFKCGPEDEGKTLDLTAKLVKEAS 131


>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
          Length = 1737

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = -2

Query: 391 YPVNIICIELSNGNRNDSIDIGNKSFKSLV 302
           +P+ +  +++S G  + S+D+G +SFKS+V
Sbjct: 733 HPLVVALLKVSTGITSGSVDVGLESFKSVV 762


>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 557 WYKKFGDGGCTLVSSTLLKELDELSAKIVSDGEKLTKKDIIDLVSSDEEFSHDDV 721
           W+    DGGC+      + +  E  A I+     LT   IID+ S +     DD+
Sbjct: 56  WFLVIEDGGCSFGEKAYMAQKGEYDAAII---YSLTSDKIIDMESDEYGRKADDI 107


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
 Frame = -1

Query: 587  YIHHHQIFC-------TNCSFVNIAFSLLFLDNVT 504
            YI HH+ FC       TN SF N +F L  ++N+T
Sbjct: 1340 YIEHHECFCIKPETVMTNVSFPNGSFVLKEVENLT 1374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,555,946
Number of Sequences: 59808
Number of extensions: 445847
Number of successful extensions: 1077
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)