Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00806
         (740 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC019582-1|AAH19582.1|  465|Homo sapiens tRNA splicing endonucle...    40   0.007
BC004211-1|AAH04211.1|  465|Homo sapiens TSEN2 protein protein.        40   0.007
BC004178-1|AAH04178.1|  465|Homo sapiens TSEN2 protein protein.        40   0.007
AK074794-1|BAC11213.1|  439|Homo sapiens protein ( Homo sapiens ...    40   0.007

>BC019582-1|AAH19582.1|  465|Homo sapiens tRNA splicing endonuclease
           2 homolog (S. cerevisiae) protein.
          Length = 465

 Score = 40.3 bits (90), Expect = 0.007
 Identities = 22/44 (50%), Positives = 25/44 (56%)
 Frame = +3

Query: 378 IFTGYYNGYNVEVRSPEEITLLYHMGCFGKGSASRSRPALVNSD 509
           IF       NV VR+ E+I  LY  G FGKG  SRSRP+   SD
Sbjct: 39  IFRAEMINNNVIVRNAEDIEQLYGKGYFGKGILSRSRPSFTISD 82


>BC004211-1|AAH04211.1|  465|Homo sapiens TSEN2 protein protein.
          Length = 465

 Score = 40.3 bits (90), Expect = 0.007
 Identities = 22/44 (50%), Positives = 25/44 (56%)
 Frame = +3

Query: 378 IFTGYYNGYNVEVRSPEEITLLYHMGCFGKGSASRSRPALVNSD 509
           IF       NV VR+ E+I  LY  G FGKG  SRSRP+   SD
Sbjct: 39  IFRAEMINNNVIVRNAEDIEQLYGKGYFGKGILSRSRPSFTISD 82


>BC004178-1|AAH04178.1|  465|Homo sapiens TSEN2 protein protein.
          Length = 465

 Score = 40.3 bits (90), Expect = 0.007
 Identities = 22/44 (50%), Positives = 25/44 (56%)
 Frame = +3

Query: 378 IFTGYYNGYNVEVRSPEEITLLYHMGCFGKGSASRSRPALVNSD 509
           IF       NV VR+ E+I  LY  G FGKG  SRSRP+   SD
Sbjct: 39  IFRAEMINNNVIVRNAEDIEQLYGKGYFGKGILSRSRPSFTISD 82


>AK074794-1|BAC11213.1|  439|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90313 fis, clone NT2RP2001388, weakly similar to
           TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 (EC 3.1.27.9).
           ).
          Length = 439

 Score = 40.3 bits (90), Expect = 0.007
 Identities = 22/44 (50%), Positives = 25/44 (56%)
 Frame = +3

Query: 378 IFTGYYNGYNVEVRSPEEITLLYHMGCFGKGSASRSRPALVNSD 509
           IF       NV VR+ E+I  LY  G FGKG  SRSRP+   SD
Sbjct: 39  IFRAEMINNNVIVRNAEDIEQLYGKGYFGKGILSRSRPSFTISD 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,894,111
Number of Sequences: 237096
Number of extensions: 2145542
Number of successful extensions: 3874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3874
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)