Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00806
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-6|CAB55149.2|  833|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z37092-1|CAA85452.1|  183|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AL117204-6|CAB55149.2|  833|Caenorhabditis elegans Hypothetical
           protein Y116A8C.13 protein.
          Length = 833

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +2

Query: 581 GCTLVSSTLLKELDELSAKIVSDGEKLTKKDIIDLVSSDEEFSHDDVDTE 730
           GC ++ + + +E D+    + +D EK+ K   ID + SD++   DD + E
Sbjct: 707 GCGMLENEMDEE-DDGDDVVENDAEKIDKSGKIDKIDSDDDEEADDEELE 755


>Z37092-1|CAA85452.1|  183|Caenorhabditis elegans Hypothetical
           protein F44F4.1 protein.
          Length = 183

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 582 PPSPNFLYQLFLCKYCLFLII 520
           PP  +FL+ LF C YC F ++
Sbjct: 5   PPFSHFLFFLFFCAYCYFQML 25


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -2

Query: 355 GNRNDSID-IGNKSFKSLV*QFSDCKVVMTKELASPKFYLQPNV 227
           G RND ID I  ++ + L   F D ++ + +++A+P  ++ PN+
Sbjct: 246 GYRNDIIDLIAERNVQQL--GFEDIEIQIPQQVANPNAHVDPNI 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,697,912
Number of Sequences: 27780
Number of extensions: 363835
Number of successful extensions: 1090
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)