Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00806
(740 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45830.1 68418.m05637 expressed protein low similarity to tum... 32 0.46
At3g50550.2 68416.m05529 expressed protein isoform contains a n... 31 0.61
At1g35260.1 68414.m04372 Bet v I allergen family protein similar... 31 0.80
At3g50550.1 68416.m05528 expressed protein isoform contains a n... 31 1.1
At4g15400.1 68417.m02354 transferase family protein similar to d... 30 1.9
At4g14390.1 68417.m02219 ankyrin repeat family protein contains ... 30 1.9
At1g70960.1 68414.m08186 F-box family protein contains Pfam PF00... 29 2.4
At5g59050.2 68418.m07399 expressed protein 29 3.2
At1g79830.1 68414.m09326 expressed protein weak similarity to TA... 29 3.2
At1g23880.1 68414.m03012 NHL repeat-containing protein contains ... 28 5.7
At3g50250.1 68416.m05495 hypothetical protein predicted protein,... 28 7.5
At3g18550.1 68416.m02359 TCP family transcription factor, putati... 28 7.5
At1g70380.1 68414.m08096 F-box family protein contains Pfam PF00... 28 7.5
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ... 28 7.5
At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340... 27 9.9
At4g33160.1 68417.m04724 F-box family protein (FBX13) contains s... 27 9.9
>At5g45830.1 68418.m05637 expressed protein low similarity to
tumor-related protein [Nicotiana glauca x Nicotiana
langsdorffii] GI:688423
Length = 291
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +2
Query: 524 IRKRQYLQRNNWYKKFGDGG---CTLVSSTLLKELDELSAKIVSDGEKLTKK 670
IR Q+L+ + Y+ G GG + +S+ L +++ L KI+ + EK+TKK
Sbjct: 115 IRVTQFLRNIDGYESSGGGGGASLSDLSAEQLAKINVLHVKIIDEEEKMTKK 166
>At3g50550.2 68416.m05529 expressed protein isoform contains a
non-consensus AT donor site at intron 1
Length = 47
Score = 31.5 bits (68), Expect = 0.61
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 665 KKDIIDLVSSDEEFSHDDVDTE 730
+K+I+D+ SSDEE+ DD D E
Sbjct: 4 EKEIVDIYSSDEEYDEDDDDDE 25
>At1g35260.1 68414.m04372 Bet v I allergen family protein similar to
Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci
124, 136-139 (1999)] contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 152
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/79 (27%), Positives = 41/79 (51%)
Frame = +2
Query: 464 EGICLEVTTRTCKQ*RYPEIIRKRQYLQRNNWYKKFGDGGCTLVSSTLLKELDELSAKIV 643
E I ++V +T + ++ + IR+ Q++ + Y K GC L+ K L K+V
Sbjct: 4 EEIEVDVDIKT-RADKFHKFIRRSQHVPKATHYIK----GCDLLEGEWGKVGSILLWKLV 58
Query: 644 SDGEKLTKKDIIDLVSSDE 700
DGE KD+I+++ ++
Sbjct: 59 FDGEPRVSKDMIEVIDEEK 77
>At3g50550.1 68416.m05528 expressed protein isoform contains a
non-consensus AT donor site at intron 1
Length = 95
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 665 KKDIIDLVSSDEEFSHDDVDTEN 733
+K+I+D+ SSDEE+ DD D ++
Sbjct: 4 EKEIVDIYSSDEEYDEDDDDDDD 26
>At4g15400.1 68417.m02354 transferase family protein similar to
deacetylvindoline 4-O-acetyltransferase [Catharanthus
roseus][GI:4091808][PMID:9681034], benzylalcohol
acetyltransferase [Clarkia
breweri][GI:6166336][PMID:10588064]
Length = 435
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 642 TILADNSSNSFKRVLETSVHPPSPNFLYQLF 550
T A SNS ET+++PP P+ +Y+ F
Sbjct: 168 TTTAKGKSNSTIEFAETTIYPPPPSHMYEQF 198
>At4g14390.1 68417.m02219 ankyrin repeat family protein contains
Pfam profile: PF00023 ankyrin repeat
Length = 694
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 695 RWILDLLCLFSLTFHHH*QFWLTTHPILSKEYLKPVY 585
+W++ ++C+ S+ F F L H +L + Y+ P Y
Sbjct: 628 KWLVVIICIISVLFFSWAIFVLGPHVMLQRSYVSPKY 664
>At1g70960.1 68414.m08186 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 369
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 528 GKGNIYKGTIGTKNLVMVDVHWF 596
GK +KGTIGTK L +WF
Sbjct: 303 GKTFYFKGTIGTKELAFAPDYWF 325
>At5g59050.2 68418.m07399 expressed protein
Length = 193
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = -2
Query: 229 VTIPLVNNAKYVSLILTIVAISRYI*NSCFYLFYMTWNLVF*PNLYLFFTNFYPKLFFL 53
VTIP +K + I +I + +SCF ++Y T NL+F L++ F L F+
Sbjct: 130 VTIPF--QSKQALIDDQIRSIQANVSSSCFLIYYFTQNLLFKKFRRLYYQRFRFNLGFV 186
>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
element modulatory factor (TMF) (Swiss-Prot:P82094)
[Homo sapiens]
Length = 927
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/25 (44%), Positives = 21/25 (84%)
Frame = +2
Query: 596 SSTLLKELDELSAKIVSDGEKLTKK 670
++ LLKE DE+ +++++GE+L+KK
Sbjct: 434 AAALLKEKDEIINQVMAEGEELSKK 458
>At1g23880.1 68414.m03012 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 545
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -2
Query: 136 LFYMTWNLVF*PNLYLFFTNFYPKLFFL*CKLSHSIQT 23
LFY + +++F +LFF N P FFL +LS S+ T
Sbjct: 6 LFYASLSILF--CCFLFFFNLSPSFFFL--RLSRSVTT 39
>At3g50250.1 68416.m05495 hypothetical protein predicted protein,
Arabidopsis thaliana
Length = 148
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 545 QRNNWYKKFGDGGCTLVSSTLLKELDELSAKIV 643
+R W GDGGC V++ + ++ L A +V
Sbjct: 36 RRRRWLSGDGDGGCPAVAAAVFRQRRWLPAMVV 68
>At3g18550.1 68416.m02359 TCP family transcription factor, putative
similar to teosinte branched1 protein GI:13649866
[Danthoniopsis dinteri]
Length = 434
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 435 TLLYHMGCFGKGSASRSRPALVNSD 509
T L H GCF G S RP L + D
Sbjct: 208 TTLSHHGCFSSGDESHIRPVLGSMD 232
>At1g70380.1 68414.m08096 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 377
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 537 NIY-KGTIGTKNLVMVDVHWF 596
N+Y KGT GTK LV +WF
Sbjct: 313 NVYFKGTTGTKELVFAPPNWF 333
>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1933
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 151 FKYTYLWLQLSISKKHILRY*RVES*HSAVNKIWDWPVL 267
FKYT+ W+ L +SK Y + + IWD V+
Sbjct: 678 FKYTFFWVMLLLSKLAFSYYVEILPLVNPTKLIWDMHVV 716
>At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340:
Protein of unknown function (DUF740)
Length = 521
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 641 VSDGEKLTKKDIIDLVSSDEEFSHDDVDT 727
+ DGE+ T K++IDL S +++ ++ D+
Sbjct: 124 IEDGEQKTMKELIDLESRNQQLKNNGKDS 152
>At4g33160.1 68417.m04724 F-box family protein (FBX13) contains
similarity to fimbriata GI:547307 from [Antirrhinum
majus]
Length = 417
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 602 TLLKELDELSAKIV-SDGEKLTKKDIIDLVSSDEEFSHDDVDTEN 733
T+ E+ LS KI S+ + +K ++ V +++ HDD DT++
Sbjct: 180 TISGEIPNLSFKIYESNADSWSKDQELESVKNNDSSLHDDYDTDS 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,383,125
Number of Sequences: 28952
Number of extensions: 325155
Number of successful extensions: 832
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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