Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00805
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   5.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.4  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 509 DDGDDSTNSKVPVHSNDDEGNET 577
           DDGDD   S    +  DD+  ET
Sbjct: 184 DDGDDGQGSSTN-NDEDDDDEET 205


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 509 DDGDDSTNSKVPVHSNDDEGNET 577
           DDGDD   S    +  DD+  ET
Sbjct: 184 DDGDDGQGSSTN-NDEDDDDEET 205


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 509 DDGDDSTNSKVPVHSNDDEGNET 577
           DDGDD   S    +  DD+  ET
Sbjct: 184 DDGDDGQGSSTN-NDEDDDDEET 205


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 137 IMNTNIYLVNSSDPLIRVRTLAYVGNVLRN 226
           I  T   L+N    +I V T AYV  V  N
Sbjct: 428 IEGTTSILINVPSLIIHVSTSAYVATVWIN 457


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,045
Number of Sequences: 336
Number of extensions: 3513
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)