Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00805
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 30 0.37
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 29 0.64
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 27 2.0
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa... 27 2.0
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 27 2.6
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 27 2.6
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.5
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 26 6.0
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 7.9
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 7.9
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 29.9 bits (64), Expect = 0.37
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 228 KKYSRFQRTARKAQDQLLQLVKDPLFTLSKLKFSKTDNIDVLAIKRNNKLISKD 389
+KYS Q +RKA+DQLL+ + D ++ + +K + I + + RN+ L KD
Sbjct: 26 RKYSNVQ--SRKAEDQLLRQIFDDQ-NIAVNQITKRNGIQGVGLFRNHFLSDKD 76
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 29.1 bits (62), Expect = 0.64
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 94 CGXCLSSDRKLSETNYEYKHLFGELVGSTNQS-AHTSLCWECIKKLKNIRDFKGQQGKHK 270
C + +K+ + + G L+ N A+ LC + IK+++ RD + + ++K
Sbjct: 169 CSLLRITKKKVRQRKVSLDPISGYLMLDKNTGKAYKKLCVDDIKEIRQGRDARNYREQYK 228
Query: 271 ISYSN*LRIRCSLYQS*NSVK 333
IS N R +Y + N +K
Sbjct: 229 ISSENEKRWFTIIYCADNKLK 249
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 46 NIKMALDSFNNLRRSLCGXCLSSDRKLSETNYEYKHL 156
N + LD+F+ R+LC C+SS ++ S T + K L
Sbjct: 291 NFENELDNFHRSARNLCKICISSAQEDSFTPWFSKWL 327
>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 397 NLLSFEINLLLRLIANTSMLSVLLNFNFDKVNNGSL 290
N+ SFE NLL N + L N+NF+ VN SL
Sbjct: 96 NVGSFESNLLDDCFKNRIEYAKLQNYNFEFVNVSSL 131
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 27.1 bits (57), Expect = 2.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 160 QINVCIHNWFLIISYLNSNT 101
++ CIH F+++ YLN+N+
Sbjct: 446 EVKDCIHRLFMVLYYLNTNS 465
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 512 DGDDSTNSKVP-VHSNDDEGNETKPLAFIKVEYSDSENILSEFADEGLTNDGAN 670
D + STNSK P + +++ P+A S + LS D G ++D N
Sbjct: 123 DENHSTNSKPPSLPPRTKSSSQSSPMASTSTSKSRYADSLSTLHDMGFSDDSVN 176
>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 123
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 593 IKVEYSD-SENILSEFADEGLTNDG 664
IK E+S SEN+L E EG+ DG
Sbjct: 94 IKEEFSQRSENVLEETRREGMNRDG 118
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 109 SSDRKLSETNYEYKHLFGELVGSTNQ--SAHTSLCWECIK 222
SSD+ + + YK+++G+L+ S TS+C E ++
Sbjct: 382 SSDKDVKQLFSNYKNIYGDLIKREGGQISLKTSMCLEILR 421
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 688 FRFCYRISTIIRQAFIGKFTQYIFTIR 608
+R C T++R+ IG+F Q+I+ R
Sbjct: 599 YRLCDFRGTLLREEMIGEFKQFIWRPR 625
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -3
Query: 331 LLNFNFDKVNNGSLTNWSS*SC 266
LL+F+F+KV + SLTN S +C
Sbjct: 68 LLDFDFEKVCSVSLTNLSVYAC 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,283
Number of Sequences: 5004
Number of extensions: 58658
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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