Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00805
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447 31 1.2
09_06_0108 - 20912236-20912364,20912470-20912601,20912718-209130... 30 2.0
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 29 3.6
07_01_0659 + 4946937-4946990,4947579-4947698,4947820-4947918,494... 29 3.6
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 29 3.6
10_01_0333 + 3675806-3676001,3676783-3677783 29 4.7
06_01_0571 - 4038319-4040877,4040962-4041012 29 4.7
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 29 4.7
02_05_1079 + 33950290-33950337,33950418-33952586,33952690-339527... 29 4.7
05_03_0497 - 14715267-14715548,14715648-14715830,14715911-147166... 28 6.2
>05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447
Length = 607
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 518 DDSTNSK-VPVHSNDDEGNETKPLAFIKVEYSDSENILSEFADEGLTNDGANAVTKAK 688
D NSK VPV SND G+ET + +++E E EG DGA+ + + K
Sbjct: 456 DKCYNSKIVPVRSNDSGGSETCAVG----RSAEAEPPAVESRPEGCEQDGASTICREK 509
>09_06_0108 -
20912236-20912364,20912470-20912601,20912718-20913071,
20913161-20913407,20913489-20913565,20913971-20914045,
20914118-20914219,20914329-20914447,20914861-20914984,
20915081-20915131,20915247-20915345,20915839-20915949
Length = 539
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 372 KLISKDNKLIANKKRALSHYNGPEITSAFGSV--NPDSSFLEINTFDW 509
KL D+KL + K PE F V +P++ LEIN FDW
Sbjct: 286 KLKMSDDKLPSKKTTVKRSNLNPEWNEDFKFVVTDPETQALEINVFDW 333
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = -3
Query: 469 LTDPKADVISGPL*CDRALFLFAINLLSFEINLLLRLIANTSMLSVLLNFNF 314
LT+P VI + RA+F N + +++ +R++ +L+++ F+F
Sbjct: 599 LTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDF 650
>07_01_0659 +
4946937-4946990,4947579-4947698,4947820-4947918,
4948038-4948175,4948268-4948402,4948501-4948609,
4948735-4948976,4949061-4949180,4949272-4949391,
4949477-4949599,4949708-4949812,4949896-4950040,
4950337-4950501,4950621-4950859,4950939-4950971,
4951082-4951163,4951314-4951474,4951566-4951751,
4951877-4952059,4952166-4952347,4952461-4952557
Length = 945
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = -3
Query: 469 LTDPKADVISGPL*CDRALFLFAINLLSFEINLLLRLIANTSMLSVLLNFNF 314
LT+P VI + RA+F N + +++ +R++ +L+++ F+F
Sbjct: 612 LTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDF 663
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 231 KYSRFQRTARKAQDQLLQLVKDPLFTLSKLKFSKTDNIDVLAIKRNNKLISKD 389
K S F+ T Q+Q+ L K +KLK + I+ + K+I KD
Sbjct: 348 KVSAFEETCSMQQEQIQTLQKQLAVATNKLKLADVTAIEAMTGYEEQKVIIKD 400
>10_01_0333 + 3675806-3676001,3676783-3677783
Length = 398
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 399 IANKKRALSHYNGPEITSAFGSVNPDSSFLEINTFDWMTEMT 524
I + +R H GP A G+ NP++ + N D+ +T
Sbjct: 9 IVDSRRGTQHSEGPATILAIGTANPENIMFQDNFADYYFGLT 50
>06_01_0571 - 4038319-4040877,4040962-4041012
Length = 869
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = -3
Query: 469 LTDPKADVISGPL*CDRALFLFAINLLSFEINLLLRLIANTSMLSVLLNFNF 314
LT+P VI + RA+F N + +++ +R++ +++++ F+F
Sbjct: 622 LTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLIAIIWKFDF 673
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = -3
Query: 469 LTDPKADVISGPL*CDRALFLFAINLLSFEINLLLRLIANTSMLSVLLNFNF 314
LT+P VI + RA+F N + +++ +R++ +L+++ F+F
Sbjct: 668 LTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLLALIWEFDF 719
>02_05_1079 +
33950290-33950337,33950418-33952586,33952690-33952780,
33952955-33953435,33954249-33954345
Length = 961
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = -3
Query: 469 LTDPKADVISGPL*CDRALFLFAINLLSFEINLLLRLIANTSMLSVLLNFNF 314
LT+P VI + RA+F N + +++ +R++ ++++L F+F
Sbjct: 621 LTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALLWKFDF 672
>05_03_0497 -
14715267-14715548,14715648-14715830,14715911-14716668,
14716762-14717167,14717274-14717399,14717506-14717625,
14717675-14718463,14718554-14718709,14718800-14718898,
14718989-14719108,14719165-14719251
Length = 1041
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = -3
Query: 469 LTDPKADVISGPL*CDRALFLFAINLLSFEINLLLRLIANTSMLSVLLNFNF 314
LT+P VI + RA+F N + +++ +R++ +L+++ F+F
Sbjct: 688 LTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRVVLGFLLLALIWRFDF 739
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,486
Number of Sequences: 37544
Number of extensions: 300560
Number of successful extensions: 764
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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