Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00805
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9)                 29   2.8  
SB_36521| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                29   3.6  
SB_15595| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_50810| Best HMM Match : DUF1452 (HMM E-Value=4.9)                   29   4.8  
SB_34046| Best HMM Match : DUF1279 (HMM E-Value=0.19)                  29   4.8  
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)              29   4.8  
SB_52971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)            28   6.4  
SB_26603| Best HMM Match : SNF (HMM E-Value=0)                         28   6.4  
SB_13087| Best HMM Match : THAP (HMM E-Value=0.63)                     28   6.4  
SB_41784| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0)               28   8.4  

>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +3

Query: 228 KKYSRFQRTARKAQDQLLQLVKDPLFTLSKLKFSKTDNIDVLA--IKRNNKLISK---DN 392
           K  S  +R  ++    +L+   +    +  ++ S TD  DVL   IK  +K+ SK   +N
Sbjct: 8   KTISDIKREIKEKTQLILETATNANLLVDVIELSDTDRSDVLLCFIKSVHKIFSKLLKEN 67

Query: 393 KLIANKK 413
           KL ANKK
Sbjct: 68  KLFANKK 74


>SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9)
          Length = 748

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
 Frame = +2

Query: 14  NNVLFKRIHLET*KWHWIPLITYGGHYAXG---V*VQIGNYQKPIMNTN-IYLVNS---S 172
           N V +    ++  +W+++  +TYG H         V    Y  PI+  N  Y VN     
Sbjct: 287 NQVTYDAPIVQANEWYYVNQVTYGAHLVQANEWYYVNQVTYGAPIVQANECYYVNQVTHG 346

Query: 173 DPLIRVRTLAYVGNV 217
            PLI+V    YV  V
Sbjct: 347 APLIQVNECYYVNQV 361


>SB_36521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 366 NNKLISKDNKLIANKKRALSHYNGPEITSAF 458
           NNK+  K N    N+K ALS+++ P++   F
Sbjct: 196 NNKVHKKKNSFQENQKAALSYHDRPKVVPKF 226


>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/52 (21%), Positives = 29/52 (55%)
 Frame = +3

Query: 441 EITSAFGSVNPDSSFLEINTFDWMTEMTVQIQKYLFTVMMMRVMKQNLLLLS 596
           ++ S FG+     + + + T   +T+MT+ +   +  +MMM +M   +++++
Sbjct: 450 KLLSCFGAPTKSKNMMVMMTMMMITKMTMMMMMMMMMMMMMMMMMMMMMMMT 501


>SB_15595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 512 DGDDSTNSKVPVHSNDDEGNETKPLAFIKVEYSDSENILSEFADEGLTN 658
           +G+ S NS +P     +  + +  L  ++ E+SD+ NIL     E   N
Sbjct: 32  NGEHSDNSNIPEALQGEHSDNSNILETLQGEHSDNSNILETLQGEHSDN 80


>SB_50810| Best HMM Match : DUF1452 (HMM E-Value=4.9)
          Length = 214

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 580 FCFITLIIITVNRYF*ICTVISVIQSNVLISK 485
           +  IT I+IT+     I T+I +I++NV+ +K
Sbjct: 54  YSIITTIVITITTIIIIVTIIIIIKNNVISNK 85


>SB_34046| Best HMM Match : DUF1279 (HMM E-Value=0.19)
          Length = 287

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 515 GDDSTNSKVPVHSNDDEGNETKPLAFIKVEYSD-SENILSEFAD 643
           GDD T   +P   ND+       L  ++ EY D +EN+L   +D
Sbjct: 22  GDDETTPLIPFDPNDEGAATRLGLQSLREEYPDLNENLLRFLSD 65


>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
          Length = 1099

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 629  SIYFHY-PNILL**KQEVLFHYPHH 558
            +I  HY PN+++     V+ HYPHH
Sbjct: 1038 AIVHHYGPNLMISHSHHVIHHYPHH 1062


>SB_52971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +3

Query: 303 FTLSKLKFSKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHYNGPEITSAFGSVNPDSS 482
           FT S  K  K  ++D+L + +++++ S   + I  +   L+H+  P  T  F  +  DS 
Sbjct: 197 FTWSISK-DKLPSLDILMVLQDHRIASTTKQQIVTRILTLTHHTPPSATHPF--LTADSY 253

Query: 483 FLEINTF 503
             E + F
Sbjct: 254 AFEFHYF 260


>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
          Length = 1682

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 509 DDGDDSTNSKVPVHSNDDEGNETKPLAFIKVEYS-DSENILSEFADEGLTNDG 664
           D  DD ++ K  V   DD+ ++ +P   +K E   DSE+   E  +   T  G
Sbjct: 419 DKKDDESSRKDKVQEEDDDVDDDQPNEMVKQESGLDSEDESEEVEERRTTRSG 471


>SB_26603| Best HMM Match : SNF (HMM E-Value=0)
          Length = 518

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 506 LDDGDDSTNSKVPVHSNDDEGNETKPLAFIKVEYSDSENILSEFADEGLTNDGA 667
           +DD DD  N      +N+D+ ++   +A + V  +    +L+ F   GLT DGA
Sbjct: 155 VDDDDDDDNDNNNNDNNEDDDDDDDDMA-VYVTATVPYIVLTIFLIRGLTLDGA 207


>SB_13087| Best HMM Match : THAP (HMM E-Value=0.63)
          Length = 318

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +3

Query: 303 FTLSKLKFSKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHYNGPEITSAFGSVNPDSS 482
           FT S  K  K  ++D+L + +++++ S   + I  +   L+H+  P  T  F  +  DS 
Sbjct: 86  FTWSISK-DKLPSLDILMVLQDHRIASTTKQQIVTRILTLTHHTPPSATHPF--LTADSY 142

Query: 483 FLEINTF 503
             E + F
Sbjct: 143 AFEFHYF 149


>SB_41784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 509 DDGDDSTNSKVPVHSNDDEGN 571
           DD DD  +S V V ++DD+GN
Sbjct: 62  DDDDDDDDSDVDVGNDDDDGN 82


>SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0)
          Length = 893

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 327 SKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHYNGPE---ITSAFGSVNPDSSFL 488
           S +DN   ++I  N + + K N   +  K    HY GP+   I     + NP+ +FL
Sbjct: 252 SISDNGQSVSISGNRQSVCKSNNGQSVSKSKRDHYKGPKEVYIERVLITSNPEEAFL 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,511,852
Number of Sequences: 59808
Number of extensions: 397387
Number of successful extensions: 1142
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)