Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00805
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 512 DGDDSTNSKVPVHSNDDEGNETKPLAFIKVEYSDSE 619
           DGDD+ + +   + N D  N+ +   F   E +D E
Sbjct: 109 DGDDNNDYEDNDYGNQDNRNDRRKKTFAAREDNDEE 144


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 566 PHHHYCEQVLLNLYCHLRHP 507
           PHHH+  Q     + H R P
Sbjct: 350 PHHHHHHQTQSLQHLHYRQP 369


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 441 LVRCNAIELFSYLLSIYYPLKLI 373
           L+ CN+    SY+++  YP+ LI
Sbjct: 805 LLVCNSYVDASYMIAFAYPIMLI 827


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 307 VNNGSLTNWSS 275
           V NGS+TNW S
Sbjct: 340 VPNGSVTNWVS 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,992
Number of Sequences: 438
Number of extensions: 3618
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)