Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00804
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 104 5e-23
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 96 1e-20
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 29 2.9
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 8.9
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 27 8.9
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001) 27 8.9
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 27 8.9
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 27 8.9
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 27 8.9
SB_6963| Best HMM Match : PHD (HMM E-Value=0.054) 27 8.9
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 104 bits (249), Expect = 5e-23
Identities = 50/84 (59%), Positives = 54/84 (64%)
Frame = +3
Query: 255 CAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPV 434
CAAY+HELPRYGVKVGLTNYAAAY TG EYNVE +
Sbjct: 13 CAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVESI 72
Query: 435 DNGPGAFRCYLDVGLARTTTGARV 506
D PGAFRC+LDVGLART+TGARV
Sbjct: 73 DGSPGAFRCFLDVGLARTSTGARV 96
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 96.3 bits (229), Expect = 1e-20
Identities = 47/83 (56%), Positives = 52/83 (62%)
Frame = +3
Query: 258 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 437
+AY+HELP +GVKVGLTNYAAAY TG EYNVE VD
Sbjct: 109 SAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVD 168
Query: 438 NGPGAFRCYLDVGLARTTTGARV 506
PGAFRC+LDVGLART+TGARV
Sbjct: 169 GSPGAFRCFLDVGLARTSTGARV 191
Score = 78.6 bits (185), Expect = 3e-15
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +1
Query: 97 RREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 219
R +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 18 RSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 117 ISFPFTTXLEFYLVPLEVLFVLHNFNESHILNLSYK 10
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1418
Score = 27.5 bits (58), Expect = 6.7
Identities = 24/90 (26%), Positives = 39/90 (43%)
Frame = +1
Query: 169 PKYRLIVRLSNKDVTCQVAYSRIXGDHIVALLIHMSCHVMV*RLV*QIMLQHIQLVCY*H 348
P+Y+ I++ SN + A + + L MSC + R++ Q+ L I + H
Sbjct: 839 PQYKRILKYSNSSQSISTAINEFTNGCLKKLTYTMSCRLRTLRMIRQLKLTLINDL---H 895
Query: 349 EDCFKDLDLTPYTLAQQMSQVMNTMLNLST 438
+ F T TL S + +L LST
Sbjct: 896 QPLF-----TIITLVLPSSTFITLVLPLST 920
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 287 WCEGWSDKLCCSIFNWSAISTKTASKTW 370
+C+ W CCSI N S + +S +W
Sbjct: 102 YCDAWYHTKCCSISNESYNTLANSSCSW 129
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 287 WCEGWSDKLCCSIFNWSAISTKTASKTW 370
+C+ W CCSI N S + +S +W
Sbjct: 115 YCDAWYHTKCCSISNESYNTLANSSCSW 142
>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 226
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 287 WCEGWSDKLCCSIFNWSAISTKTASKTW 370
+C+ W CCSI N S + +S +W
Sbjct: 71 YCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 287 WCEGWSDKLCCSIFNWSAISTKTASKTW 370
+C+ W CCSI N S + +S +W
Sbjct: 71 YCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 287 WCEGWSDKLCCSIFNWSAISTKTASKTW 370
+C+ W CCSI N S + +S +W
Sbjct: 370 YCDAWYHTKCCSISNESYNTLANSSCSW 397
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 287 WCEGWSDKLCCSIFNWSAISTKTASKTW 370
+C+ W CCSI N S + +S +W
Sbjct: 656 YCDAWYHTKCCSISNESYNTLANSSCSW 683
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 287 WCEGWSDKLCCSIFNWSAISTKTASKTW 370
+C+ W CCSI N S + +S +W
Sbjct: 195 YCDAWYHTKCCSISNESYNTLANSSCSW 222
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 287 WCEGWSDKLCCSIFNWSAISTKTASKTW 370
+C+ W CCSI N S + +S +W
Sbjct: 34 YCDAWYHTKCCSISNESYNTLANSSCSW 61
>SB_6963| Best HMM Match : PHD (HMM E-Value=0.054)
Length = 146
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 287 WCEGWSDKLCCSIFNWSAISTKTASKTW 370
+C+ W CCSI N S + +S +W
Sbjct: 115 YCDAWYHTKCCSISNESYNTLANSSCSW 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,119,307
Number of Sequences: 59808
Number of extensions: 292207
Number of successful extensions: 734
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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