Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00804
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   133   8e-32
Z69386-3|CAA93432.2|  322|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  133 bits (321), Expect = 8e-32
 Identities = 60/76 (78%), Positives = 67/76 (88%)
 Frame = +1

Query: 31  MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 210
           MG VKV+KNK YFKRYQVK + RREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 211 TCQVAYSRIXGDHIVA 258
             Q+AYS+I GD +VA
Sbjct: 61  VAQLAYSKIEGDVVVA 76



 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 38/83 (45%), Positives = 48/83 (57%)
 Frame = +3

Query: 258 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 437
           +AYSHELPRYG+KVGLTNYAAAY+TG                          +YNVE  +
Sbjct: 77  SAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEE-E 135

Query: 438 NGPGAFRCYLDVGLARTTTGARV 506
                F+  LD+GLARTTTG+++
Sbjct: 136 GDRAPFKAVLDIGLARTTTGSKI 158


>Z69386-3|CAA93432.2|  322|Caenorhabditis elegans Hypothetical
           protein ZK596.3 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 207 IFVGETHNQTIFRCVI--FVLVLNNEAFTSIIISFPFTTXLEFYLVPLEVLFVLHNFNES 34
           + +  TH   +F+C++  FV + N+      II FP  T    + + L V+  L    +S
Sbjct: 141 VLLSMTH--ALFQCMLINFVSMANHSPTLERIIGFPLVTVETVHNLCLYVISALQYEQDS 198

Query: 33  HIL 25
           H++
Sbjct: 199 HLM 201


>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 151 KNKYNTPKYRLIVRLSNKDVTCQVAYSRIXG 243
           K+K  TP YRL++ L + D+T  V  S I G
Sbjct: 187 KSKSRTPTYRLMLILGSLDLTGLVISSLIPG 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,137,926
Number of Sequences: 27780
Number of extensions: 213833
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)