Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00804
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   104   3e-23
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   103   5e-23
At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UD...    27   7.3  
At5g35753.1 68418.m04282 expressed protein                             27   9.6  
At1g29570.1 68414.m03616 zinc finger protein-related contains si...    27   9.6  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  104 bits (250), Expect = 3e-23
 Identities = 47/76 (61%), Positives = 57/76 (75%)
 Frame = +1

Query: 31  MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 210
           M FVK  K+  YFKRYQVKF+ RR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 211 TCQVAYSRIXGDHIVA 258
             Q+  + I GD + A
Sbjct: 61  VAQIVSASIAGDIVKA 76



 Score = 70.5 bits (165), Expect = 6e-13
 Identities = 38/83 (45%), Positives = 46/83 (55%)
 Frame = +3

Query: 258 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 437
           +AY+HELP+YG+ VGLTNYAAAY TG                          +++VEP D
Sbjct: 77  SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTD 136

Query: 438 NGPGAFRCYLDVGLARTTTGARV 506
           +    FR  LDVGL RTTTG RV
Sbjct: 137 S-RRPFRALLDVGLIRTTTGNRV 158


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  103 bits (248), Expect = 5e-23
 Identities = 47/76 (61%), Positives = 57/76 (75%)
 Frame = +1

Query: 31  MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 210
           M FVK  K+  YFKRYQVKF+ RR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 211 TCQVAYSRIXGDHIVA 258
             Q+  + I GD + A
Sbjct: 61  VAQIVSASIAGDIVKA 76



 Score = 70.5 bits (165), Expect = 6e-13
 Identities = 38/83 (45%), Positives = 46/83 (55%)
 Frame = +3

Query: 258 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 437
           +AY+HELP+YG+ VGLTNYAAAY TG                          +++VEP D
Sbjct: 77  SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTD 136

Query: 438 NGPGAFRCYLDVGLARTTTGARV 506
           +    FR  LDVGL RTTTG RV
Sbjct: 137 S-RRPFRALLDVGLIRTTTGNRV 158


>At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative strong similarity to
           sucrose synthase GI:6682841 from [Citrus unshiu]
          Length = 809

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 218 WHVTSLLERRTIRRYLGVLYL 156
           W   S LERR  RRYL + Y+
Sbjct: 773 WKYVSKLERRETRRYLEMFYI 793


>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 97  RREGKTDYYARKRL-VVQDKNKYNTPKYRLIVRLSNKDVTCQ 219
           RR G+ DYY +KRL        Y   +Y  + +  NK ++C+
Sbjct: 79  RRSGEIDYYLQKRLDTFWTVCTYCKVQYEYLRKYVNKRLSCK 120


>At1g29570.1 68414.m03616 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 321

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 333 QLNMLQHNLSDQPSHHNVATHVNKQRNNMVT 241
           Q N+ Q  L D P +HNV    N Q    ++
Sbjct: 244 QENLQQQRLQDMPENHNVDDQQNLQEQRRIS 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,325,095
Number of Sequences: 28952
Number of extensions: 188639
Number of successful extensions: 416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)