Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00803
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.67 
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    24   1.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 684  TTPWPRSDSTIRTTATDPT 628
            T+PW  + +T RTT T PT
Sbjct: 1048 TSPWWTTTTTRRTTTTRPT 1066


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 21/55 (38%), Positives = 25/55 (45%)
 Frame = -3

Query: 433 VSLVIELPVLSAHGTLLLRLRV*PLYNTVNVETVRASTPN*RAVVPR*FAVWTAA 269
           VSLV EL        LL+ L V P  N+      RA +PN   VV   F  +T A
Sbjct: 198 VSLVRELRGAFKAENLLVTLTVLPNVNSTVYYDPRALSPNLEFVVLEAFDFYTPA 252


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 177 MKVTVKSWTGVATWRWVANDD 239
           +K   K WTG+   +W   +D
Sbjct: 188 LKGNAKHWTGIFQKKWRGYED 208


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +2

Query: 206 GSNLEVGSKRRQLWDLCMPFDSCCPDCKLPGDDCPLV 316
           G+N+ +      LW   MP    C     P D  PL+
Sbjct: 462 GNNMGIQPYDSLLWHTWMPVMRICVSAWNPKDCDPLI 498


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,133
Number of Sequences: 336
Number of extensions: 3795
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)