Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00803
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 83 4e-17
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 54 2e-08
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 43 4e-05
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 39 0.001
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 38 0.002
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 38 0.002
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 37 0.004
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 35 0.015
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 34 0.026
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 33 0.045
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 33 0.060
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.10
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.14
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 31 0.24
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 30 0.42
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.42
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 29 0.56
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 29 0.56
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 28 1.3
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 27 2.3
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 27 2.3
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.3
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 3.9
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 27 3.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 5.2
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 26 6.9
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 6.9
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 9.1
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 83.0 bits (196), Expect = 4e-17
Identities = 32/51 (62%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 257 MPFDSCCPDCKLPGDDCPLVWGACSHCFHIHCIVKWL-HSQPQQQCPMCRQ 406
+PFD CCP C PGD+CP+VWG C H FH HCI WL S Q QCPM RQ
Sbjct: 29 VPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQCPMDRQ 79
Score = 30.7 bits (66), Expect = 0.24
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 177 MKVTVKSWTGVATWRW-VANDDNCGIC 254
MKV + + +A W W DD CGIC
Sbjct: 1 MKVKILRYHAIANWTWDTPKDDVCGIC 27
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 54.4 bits (125), Expect = 2e-08
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +2
Query: 233 RRQLWDLCMPFDSCCPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMCRQDW 412
R + DLC+ + +C + WG C+H FH HCI +WL++ + CP+ ++W
Sbjct: 45 RNHIMDLCIECQANTDSAA--AQECTVAWGTCNHAFHFHCISRWLNT--RNVCPLDNREW 100
Query: 413 KF 418
+F
Sbjct: 101 EF 102
Score = 35.5 bits (78), Expect = 0.009
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 189 VKSWTGVATWRWVANDDNCGICVCHLI 269
+K W VA W+W DNC IC H++
Sbjct: 23 IKKWNAVALWQWDIVVDNCAICRNHIM 49
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 43.2 bits (97), Expect = 4e-05
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 320 GACSHCFHIHCIVKWLHSQPQQQCPMCRQDWKF 418
G C H FH C+ KW S +CP+CR + F
Sbjct: 1577 GTCRHKFHASCLYKWFKSSNSSRCPLCRSSFTF 1609
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 38.7 bits (86), Expect = 0.001
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Frame = +2
Query: 137 NKSKTSILAL*SRYESNCKKLDRGSNL-EVGSKRRQLWDLCMPFDSC--CPDCKLPGDDC 307
NKS+ S A SR N K++ +G +L ++ R + +L C C D P
Sbjct: 152 NKSERSREAK-SRMPKNSKEIKKGLDLSKLDMTSRMIVELKNRLYECSVCTDTINPSTS- 209
Query: 308 PLVW--GACSHCFHIHCIVKWLHSQPQQ------QCPMCRQD 409
+W G C H FH+ CI KW + +Q +CP C+ +
Sbjct: 210 --IWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQSN 249
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCRQ 406
C H H HC+ WL + QQ CP+CR+
Sbjct: 328 CGHILHFHCLRNWL--ERQQTCPICRR 352
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 266 DSC--CPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMCR 403
DSC C + GD C + AC H FH CI +WL + CP+CR
Sbjct: 764 DSCLICLETYTNGDICRKLQ-ACKHFFHQACIDQWL-TTGNNSCPLCR 809
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCR 403
C+H FH CI +WL S Q CP+CR
Sbjct: 544 CNHFFHRECIDQWLTSS-QNSCPLCR 568
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 34.7 bits (76), Expect = 0.015
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCRQDW 412
C H FH CI W+ + + CP+C +D+
Sbjct: 223 CEHVFHTQCIDTWMTTM-KASCPLCNEDY 250
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 33.9 bits (74), Expect = 0.026
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 239 QLWDLCMPFDSCCPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMCRQD 409
QL DL P C D D+ C H F +C+ KWL + CP+CR++
Sbjct: 101 QLMDLTCPI---CYDDMNENDEKQATKMPCGHIFGKNCLQKWLEN--HCTCPLCRKE 152
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 33.1 bits (72), Expect = 0.045
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +2
Query: 230 KRRQLWDLCMPFDSCCPDC---KLPGDDCPLVWGA-CSHCFHIHCIVKWLH-SQPQQQCP 394
KR Q LC +S P+C +P C ++ A CSH +H CI L+ S P C
Sbjct: 174 KRMQELVLCGSSESGPPECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCF 233
Query: 395 MCRQ 406
+CR+
Sbjct: 234 ICRK 237
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 32.7 bits (71), Expect = 0.060
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCRQDW 412
C H FH HC+ W + CP+CR ++
Sbjct: 56 CGHYFHNHCLESW--CRVANTCPLCRTEF 82
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 31.9 bits (69), Expect = 0.10
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 311 LVWGACSHCFHIHCIVKWLHSQPQQQCPMCRQDWK 415
L+ C H FH C+ KW +S CP+CR K
Sbjct: 222 LITIVCQHTFHCPCLQKWGNS----SCPVCRYTQK 252
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCR 403
CSH F +HC++ L Q CP+CR
Sbjct: 375 CSHVFCLHCLI-ILQKQKVDFCPLCR 399
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 30.7 bits (66), Expect = 0.24
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCR 403
C H +H C+++W+ + + CP+CR
Sbjct: 647 CHHLYHRQCLLQWM--ETRSICPVCR 670
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 29.9 bits (64), Expect = 0.42
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 333 TVSTFTVL*SGYTLSLNSSVPCADKTGSSITSETFAT*TIPGYQH-NVVARPAPSTEES 506
+VS+FT S YT +L +S TG+ S TF T + P Y + +V+ APS+ S
Sbjct: 416 SVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSATF-TSSPPFYSNSSVIPTSAPSSVSS 473
Score = 28.7 bits (61), Expect = 0.98
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 333 TVSTFTVL*SGYTLSLNSSVPCADKTGSSITSETFAT*TIPGYQH-NVVARPAPSTEES 506
+VS+FT S YT +L +S TG+ S TF T + P Y + +V+ PS+ S
Sbjct: 308 SVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSATF-TSSPPFYSNSSVIPTSVPSSVSS 365
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 333 TVSTFTVL*SGYTLSLNSSVPCADKTGSSITSETFAT*TIPGYQH-NVVARPAPSTEES 506
+VS+FT S YT +L +S TG+ S TF T + P Y + +V+ PS+ S
Sbjct: 362 SVSSFTSSNSSYTTTLTASNTSITYTGTGTGSATF-TSSPPFYSNSSVIPTSVPSSVSS 419
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 333 TVSTFTVL*SGYTLSLNSSVPCADKTGSSITSETFAT*TIPGYQHNVVARP 485
+VS+FT S YT +L +S TG+ S T AT + P Y ++ + P
Sbjct: 470 SVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSAT-ATSSSPYYSNSSIIVP 519
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.9 bits (64), Expect = 0.42
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCRQ 406
C H + C++ WL + + CP CRQ
Sbjct: 100 CGHTYCYECLLNWL--KESKSCPTCRQ 124
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 29.5 bits (63), Expect = 0.56
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 266 DSCCPDCKLPG-DDCPLVWGA-CSHCF---HIHCIVKWLHSQPQQQCPMCRQDWKF 418
D C C+ G D PL C+ H C+V+WL + C +C+ ++F
Sbjct: 5 DEICRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEF 60
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 0.56
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCRQD 409
C H FH CI KW+ + CP C +
Sbjct: 339 CKHEFHRPCIAKWIVDY-RHACPTCNTE 365
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 308 PLVWGACSHCFHIHCIVKWLHSQPQQQCPMCR 403
PL+ +CSH F CI +L P CP CR
Sbjct: 39 PLIT-SCSHTFCSFCIRDYLREHP--MCPACR 67
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 27.5 bits (58), Expect = 2.3
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +1
Query: 325 LLSLFPHSLYCKVATLSASTAVSHVQTRLEVQ*QVKHSLRKQFRAISTMSLQGLPPLPKS 504
L PH Y ++ T T V+H +++ + R + +T+ L P KS
Sbjct: 3 LTKQIPH--YSRIHTTQLLTVVNHRTIPFKIRGSFSNCRR--YSNFATVPLLERPFKNKS 58
Query: 505 LMASQKTIRILRTLQTHLTKNHPP 576
+ + R T + LTK+HPP
Sbjct: 59 KHNTARASRPFSTQKMLLTKSHPP 82
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -2
Query: 773 CGGACPEVVYGWGRWWCWSESRRPFQLSPPRRHGLAQ-TPQFGQQRQIQLTQAGHFFLEI 597
C CP +VYG+ C+ LS P+ + + Q G+ I ++ G FL++
Sbjct: 613 CNNDCPHMVYGFNGALCY------MPLSMPQSYDVCQFRDNSGKDFLISVSLGGLKFLQL 666
Query: 596 NKL 588
N L
Sbjct: 667 NPL 669
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCR 403
C H FH +CI WL + C +CR
Sbjct: 414 CKHYFHENCIKPWL--RVNGTCAICR 437
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/42 (26%), Positives = 15/42 (35%)
Frame = +2
Query: 275 CPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMC 400
C C+LP + C H H C+ W P+C
Sbjct: 789 CVYCELPLRGVLVYPPVCGHIGHESCLRSWYFDNTDDALPVC 830
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 379 STAVSHVQTRLEVQ*QVKHSLRKQFRAISTMSLQGLPPLPKSLMASQKTIRI 534
STAV + T L + + +L K + L+G+PP P+ + + T +
Sbjct: 456 STAVDNQNTVLIQVYEGERTLTKDNNLLGKFDLRGIPPAPRGVPQIEVTFEV 507
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 272 CCPDCKLPGDDCPLVWGACSHCFHIHCIV 358
CC C + G + LV C C H C V
Sbjct: 814 CCALCGIVGTEGLLVCFKCGTCVHERCYV 842
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 278 PDCKLPGDDCPLVWGA 325
PD K+PG +CP+ GA
Sbjct: 368 PDLKIPGVNCPIPTGA 383
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 716 ESRRPFQLSPPRRHGLAQTP 657
ES PF + P+R G QTP
Sbjct: 481 ESNNPFPVMQPQRTGFGQTP 500
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 475 LQGLPPLPKSLMASQKTIRILRTLQTHLTKNHPPILI 585
+QG PP + S + L T+Q+ K+H P+L+
Sbjct: 412 IQG-PPGTGKTVTSASVVYHLATMQSRKRKSHSPVLV 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,350
Number of Sequences: 5004
Number of extensions: 57454
Number of successful extensions: 163
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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