Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00803
(774 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 39 0.004
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 36 0.048
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.084
SB_40323| Best HMM Match : zf-C3HC4 (HMM E-Value=0.42) 35 0.084
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019) 33 0.19
SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_27393| Best HMM Match : zf-C3HC4 (HMM E-Value=4.8e-18) 33 0.34
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079) 33 0.34
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 32 0.45
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 32 0.45
SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 31 0.78
SB_8003| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 31 1.0
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_49394| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.2) 31 1.4
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 31 1.4
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_16070| Best HMM Match : IncA (HMM E-Value=0.43) 30 1.8
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 30 2.4
SB_44729| Best HMM Match : SET (HMM E-Value=0) 29 4.2
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 29 5.5
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10) 28 7.3
SB_4637| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 28 9.6
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_35740| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +2
Query: 257 MPFDSC--CPDCKLPGDDCPLVWGACSHCFHIHCIVKWL---HSQPQQQCPMCR 403
+P C C D PG C L+ C H FH HCI WL ++ P CP CR
Sbjct: 555 IPCGECVICLDEFKPG--CTLLGLPCGHSFHQHCIEVWLAGDNTAPHHCCPNCR 606
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 35.5 bits (78), Expect = 0.048
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 326 CSHCFHIHCIVKWL-HSQPQQQCPMCRQDWKFNNK*NI-RYVNNSGLSAQCRCKAC 487
C H F + CI +WL + + CP+C+ N I R + N+ S Q C++C
Sbjct: 175 CDHYFCVLCICEWLDQTYNKSGCPVCKASISSNVLHKIQRVLGNTLASCQVLCRSC 230
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 34.7 bits (76), Expect = 0.084
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCRQDWKFNNK 427
C H FH CI+ WL + CP+CR + +N+
Sbjct: 80 CDHLFHPGCILPWL--EKTNSCPVCRHELPTDNE 111
>SB_40323| Best HMM Match : zf-C3HC4 (HMM E-Value=0.42)
Length = 495
Score = 34.7 bits (76), Expect = 0.084
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 275 CPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQ--PQQQCPMCRQD 409
C C D+ + C H C+ KW+HS PQ CP CR++
Sbjct: 13 CVVCCEVDDELMELLPCCKQPCHYICLWKWIHSDLTPQVACPHCRKE 59
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +2
Query: 233 RRQLWDLCMPFDSCCPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMCRQDW 412
R + +D+C + C D GD ++ C H +H C+ WL ++ ++ CP+C++
Sbjct: 294 RDEYYDVC----AICLDEYKEGDKLRIL--PCDHAYHCKCVDPWL-TEGKRTCPVCKRPV 346
Query: 413 KFNNK 427
+ + K
Sbjct: 347 ETSKK 351
>SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019)
Length = 413
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 245 WDLCMPFDSCCPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMCRQDWKFNN 424
++L + + CCP C + P C+H + C+ K Q +CP+CR+ K N
Sbjct: 12 FELFLQEEICCPICT-EIFETPKCLPVCAHNVCLSCLKKMKIEQGFIKCPICRKKTKITN 70
>SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 275 CPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQ--PQQQCPMCRQDWK 415
C C D+ + C H C+ KW+H+ P+ CP CR+ ++
Sbjct: 11 CIICCEGDDELMELLPCCKQPCHFPCLWKWIHAHLTPRATCPHCRKGYR 59
>SB_27393| Best HMM Match : zf-C3HC4 (HMM E-Value=4.8e-18)
Length = 391
Score = 32.7 bits (71), Expect = 0.34
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = +2
Query: 152 SILAL*SRYESNCKKLD--RGSNLEVGSKRRQLWDLCMPFDSCCPDCKLPGDDCPL-VWG 322
S+L + +R + K D R S L S +L+D C + C C +D PL V
Sbjct: 136 SLLQVNTRETDSTKGSDSPRCSFLASPSSNSKLYDSC---NLMCRICHGGDEDEPLMVTC 192
Query: 323 ACSHCF---HIHCIVKWLHSQPQQQCPMCRQDWKFNNK 427
C+ H +C++ W+ Q C +C+ +K K
Sbjct: 193 RCTGTVKYAHQNCVLNWISKSGNQYCELCKYKYKTKRK 230
>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
Length = 689
Score = 32.7 bits (71), Expect = 0.34
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 296 GDDCPLVWGACSHCFHIHCIVKWLHSQ--PQQQCPMCRQ 406
GDD + C H C+ KW+H+ P+ CP CR+
Sbjct: 190 GDDELELLPCCKQPCHYPCLWKWVHAHLTPRSTCPHCRK 228
>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 326 CSHCFHIHCIVKWL-HSQPQQQCPMCRQDWKFNNK*NI-RYVNNSGLSAQCRCKAC 487
C H F + CI +WL + + CP+C+ I R + N+ S Q C++C
Sbjct: 175 CDHYFCVLCICEWLDQTYNKSGCPVCKASISPGVLHKIPRVLGNTLASCQVLCRSC 230
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 326 CSHCFHIHCIVKWL-HSQPQQQCPMCRQDWKFNNK*NI-RYVNNSGLSAQCRCKAC 487
C H F + CI +WL + + CP+C+ I R + N+ S Q C++C
Sbjct: 49 CDHYFCVLCICEWLDQTYNKSGCPVCKASISPGVLHKIPRVLGNTLASCQVLCRSC 104
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 326 CSHCFHIHCIVKWL-HSQPQQQCPMCRQDWKFNNK*NI-RYVNNSGLSAQCRCKAC 487
C H F + CI +WL + + CP+C+ I R + N+ S Q C++C
Sbjct: 175 CDHYFCVLCICEWLDQTYNKSGCPVCKASISPGVLHKIPRVLGNTLASCQVLCRSC 230
>SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 31.9 bits (69), Expect = 0.59
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 186 TVKSWTGVATWRWVANDDNCGICVCHLIA 272
++K W +A W W D C IC ++A
Sbjct: 32 SLKKWNAIAMWSWDVECDTCAICRVQVMA 60
>SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 275 CPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQ--PQQQCPMCRQDW 412
C C D+ + C H C+ KW+H+ P+ CP CR+ +
Sbjct: 11 CIICCEGDDELMELHPCCKQPCHYICLWKWIHAHLTPRATCPHCRKGY 58
>SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 275 CPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQ--PQQQCPMCRQD 409
C C D+ + C H C+ KW+H+ P+ CP CR++
Sbjct: 7 CIICCEGDDELMELLPCCKQPCHHPCMWKWIHAHLTPRSTCPHCRKE 53
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 31.5 bits (68), Expect = 0.78
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 266 DSCCPDCKLPGDDCPLVWGA-CSHCFHIHCIVKWLHSQPQQQCPMCRQDWKFNNK 427
D+ C C + ++ LV C H +H CI KWL ++ Q Q + + +F+N+
Sbjct: 290 DARCVVCLVDFEEKQLVRTLPCLHEYHTRCIDKWLKNRDQSQWKLEDGNAEFDNQ 344
>SB_8003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQP----QQQCPMCRQDWKFN 421
C+ H C+ +W ++Q QQ CP CR D N
Sbjct: 21 CTQKIHSECLTQWNNAQAANNQQQTCPFCRSDEPHN 56
>SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 539
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 275 CPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQ--PQQQCPMCRQ 406
C C D+ + C H C+ KW+H+ P+ CP CR+
Sbjct: 11 CIICCEGDDELMQLLPCCKQPCHHPCLWKWVHAHLTPRSTCPHCRK 56
>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +2
Query: 284 CKLPGDDCPLVWGACSHCFHIHCIVKWL--HSQPQQQCPMCR 403
C PG + C H C KW+ H + CP CR
Sbjct: 42 CVFPGGAVLEILPCCKQACHYPCFWKWIHYHRSKEDTCPHCR 83
>SB_49394| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.2)
Length = 373
Score = 30.7 bits (66), Expect = 1.4
Identities = 29/104 (27%), Positives = 42/104 (40%)
Frame = +1
Query: 343 HSLYCKVATLSASTAVSHVQTRLEVQ*QVKHSLRKQFRAISTMSLQGLPPLPKSLMASQK 522
HSL CK TL+ TA +H TR HSL ++ ++T +L + +
Sbjct: 154 HSLLCKHTTLA--TAQTHY-TRYCAN--TVHSLLRKHTTLATAQTHYTRYCANTLHSLLR 208
Query: 523 TIRILRTLQTHLTKNHPPILIHSLFISRKKWPACVSWICRCCPN 654
L T+QTH T+ +HSL + R C N
Sbjct: 209 KHTTLATVQTHYTRYCANSTLHSLLRKHTTLVTAQTHYTRYCAN 252
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCR 403
C H F C+ WL Q CP CR
Sbjct: 33 CGHSFCESCLETWLSRPEVQSCPSCR 58
>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQP-QQQCPMCR 403
C H F C+ +WL ++P + CP+C+
Sbjct: 78 CGHLFCWPCLHRWLETRPNRSMCPVCK 104
>SB_16070| Best HMM Match : IncA (HMM E-Value=0.43)
Length = 895
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -2
Query: 773 CGGACPEVVYG--WGRWWCW--SESRRPFQLSPPRRHGLAQTPQFGQQRQIQ 630
CG A P GR WC S S R F+ SPP+R+ Q QQR ++
Sbjct: 449 CGSAAPSSRLHDIKGRIWCQPDSHSLRCFERSPPKRYVGVLDQQLVQQRLVE 500
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCR 403
CSH F +C+ WL + + CP+CR
Sbjct: 386 CSHSFCEYCLQSWL--RKRNTCPICR 409
>SB_44729| Best HMM Match : SET (HMM E-Value=0)
Length = 1112
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Frame = +2
Query: 281 DCKLPGDDCPLVW---GACSHCFHIHCIVKWLHSQPQQQCPMCRQDWKFNNK*NIRYVNN 451
DC + GD L+ C C+H+ C+ Q + QCP W F +N
Sbjct: 977 DCFICGDGGQLIMCDRSGCLKCYHVDCLNLDKKPQGRWQCP-----WHF--------CDN 1023
Query: 452 SGLSAQCRCKACP 490
G A C CP
Sbjct: 1024 CGKRATVLCSECP 1036
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQ---QCPMCRQDWKFNN 424
C H F + C+ + LH ++ +CP CR + + N
Sbjct: 35 CYHSFCLRCVQELLHQSGEKGVVKCPQCRTEMEIPN 70
>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 269 SCCPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMCRQDWKF 418
S C C P D P V C H FH C +++ +CP+C + K+
Sbjct: 72 SKCNLCSRPLD-LPAVHFLCLHSFHQPCFEG--YAENDNECPICTPENKY 118
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMC 400
C H F CIV WL Q CP+C
Sbjct: 1382 CLHSFCRSCIVSWL--QASYHCPVC 1404
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Frame = +2
Query: 248 DLCMPFDSCCPD-------CKLPG-DDCPL-VWGACSHCFH 343
+ C P CCPD CKL G DC + W S C H
Sbjct: 486 EFCEPAGDCCPDFKAVKEECKLQGVQDCVVSTWSRWSPCSH 526
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 326 CSHCFHIHCIVKWLHSQPQQQCPMCR 403
C H F CI W + Q CPMCR
Sbjct: 499 CKHIFCEDCISLWFDRE--QTCPMCR 522
>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 767 GACPEVVYGWGRWWCWSESRRPFQLSPPRR 678
G P V + W R +C S RP+ SP R
Sbjct: 88 GPAPTVTHSWSRPYCHSPVDRPYCYSPVDR 117
>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
Length = 466
Score = 28.3 bits (60), Expect = 7.3
Identities = 6/24 (25%), Positives = 16/24 (66%)
Frame = +2
Query: 341 HIHCIVKWLHSQPQQQCPMCRQDW 412
H+ C+ +WL + + +C +C+ ++
Sbjct: 133 HVRCLEEWLSASNKNECEICKYEY 156
>SB_4637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 404 VCTWDTAVEAESVATLQYSECGNSESKHPK 315
VC T ++E A Q+ ECG +E H K
Sbjct: 109 VCNKVTFTQSEDRAAKQWCECGKNEDTHTK 138
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 27.9 bits (59), Expect = 9.6
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = +2
Query: 173 RYESNCKKLDRGSNLEVG--SKRRQLWDLCMPFDSCCPDCK---LPGDDCPLVWGACSHC 337
+YES+ +R S++E S+ L + C C G D +V C H
Sbjct: 178 QYESSLANSERSSHIEEDGLSETASLASHVTEKNPKCVICLEGFKNGQDLRIV--PCRHE 235
Query: 338 FHIHCIVKWLHSQPQQQCPMC 400
FH C+ WL S CP+C
Sbjct: 236 FHKECVDPWLLS--NFTCPLC 254
>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 245 WDLCMPFDSCCPDCKLPGDDCPLVWGACSHCFHIHC 352
W +C P CC C+ D CPL C+ F I C
Sbjct: 165 WFMCGPL--CCYSCESGTDVCPLA-TPCASQFGITC 197
>SB_35740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 248 DLCMPFDSCCPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQP-QQQCPMCRQDW 412
D C + C DC P C G+ + +H I + QP QQ + R++W
Sbjct: 748 DECFDYRCLCEDCGKPYSTCNC--GSAAPSSRLHDIKGRIWCQPDSQQLEVFREEW 801
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,512,773
Number of Sequences: 59808
Number of extensions: 472669
Number of successful extensions: 1273
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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