Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00802
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 30 0.28
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 28 1.5
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 27 2.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.4
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 4.5
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 4.5
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 4.5
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 26 6.0
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.9
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 7.9
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 459 DRYYVEAYKTLHNPTHSRTTETLTVQDADTTLNTDSTETVSA 584
D Y+V+ Y +L+NP+ R LT+ +AD + E+ A
Sbjct: 428 DTYHVQVYCSLNNPSVFRFLPPLTIPEADLDEGLSAVESAVA 469
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 412 ITQSKTETIPPATKDATATTSRPTKHYT---IRPIVERQKPLRFK 537
+T+ KT PP+ D+T+TT T + RPI +P K
Sbjct: 203 VTEEKTMVSPPSRPDSTSTTKSKTSSISSARARPIRASSRPTASK 247
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 564 STETVSADTAGITVDGPKVTASTANIADETRS 659
ST SADTAG P TA + I +T S
Sbjct: 311 STRPSSADTAGSPATSPPATADSKTIVSKTIS 342
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +3
Query: 513 TTETLTVQDADTTLNT---DSTETVSADTAGITVDGPKVTASTANIADETRSTDAGTAST 683
TT LT D T +T +TVS TA D TAST++ T S+ + +++T
Sbjct: 951 TTGDLTTIDPTTFTSTYLSSGFQTVSNTTATSGSDDDVKTASTSSSTSYTSSSSSSSSTT 1010
Query: 684 VTLDS 698
S
Sbjct: 1011 SAASS 1015
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 400 HETKITQSKTETIPPATKDATATTSRPTKHYTIRPIVERQKPLRFKT 540
HETK SK+E P+ + + P K T+ KP++F T
Sbjct: 306 HETK--DSKSEESKPSNNEKSENAVEPAKGNTMSFSWTPDKPIKFDT 350
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 135 TETNLPRSWTI-SSHRPERPNNQTSIRPP 218
T++N+PR T+ SS P PN S PP
Sbjct: 144 TDSNIPRPGTVKSSASPFVPNQNPSAPPP 172
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 415 TQSKTETIPPATK-DATATTSRPTKH 489
+ + T T+PP T + T TT+ PT H
Sbjct: 89 SMNTTTTVPPTTSLNTTTTTAPPTTH 114
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 207 IRPPIAGHLLPRKVRTHPDNDDPRRTYYVRE-KNLHE 314
I PP+AG LL + P DP +++E +HE
Sbjct: 360 ICPPVAGQLLVDMLVNPPKPGDPSYDLFIKEVDEIHE 396
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 132 RTETNLPRSWTISSHRPERPNNQTSIRPP 218
+T+ LPRSW I P N +R P
Sbjct: 449 QTDHQLPRSWAIYVREAFVPQNHPVLRAP 477
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = +3
Query: 438 PAGYERRDRYY-VEAYKTLHNPTHSRTTETLTVQDADTTLNTDSTETVSADTAGITVDGP 614
PA + D Y A +PT RTT + T+ +TDS ++S +
Sbjct: 139 PASAPKHDLYSSANASSASLHPTEQRTTSSPTIPSYANRTHTDSPTSLSHRLPNVPDTNA 198
Query: 615 KVTASTANIADETRSTDAGT 674
T N + + S A T
Sbjct: 199 LNTVQANNSSTSSLSQGAQT 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,350
Number of Sequences: 5004
Number of extensions: 50117
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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