Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00802
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141...    29   4.7  
05_03_0240 + 10813886-10814060,10814164-10814275,10814901-108150...    29   4.7  
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118...    28   6.2  
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266...    28   8.2  

>11_01_0179 -
           1412391-1412863,1412947-1413412,1413504-1414551,
           1414639-1414725,1416244-1416411,1416785-1416958,
           1417662-1417720,1418132-1420154,1420549-1420647,
           1420998-1421796,1422101-1422120,1422446-1422513
          Length = 1827

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 632 GEHSRRDEIHGRWYREHRHPGL 697
           G ++RR  +HGR   EH HP L
Sbjct: 581 GSNARRLAVHGRSVEEHNHPQL 602


>05_03_0240 +
           10813886-10814060,10814164-10814275,10814901-10815077,
           10815287-10815413,10815529-10815642
          Length = 234

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 692 QGDGARGTSVRGSRLVCYVRRRSSNFRPIY 603
           +G  ARG  V   RLV +V    SNFR I+
Sbjct: 9   RGGEARGVGVERKRLVVFVSGGGSNFRAIH 38


>08_02_0550 +
           18509365-18509589,18509668-18510644,18510828-18511802,
           18511885-18512142,18512216-18512326,18512418-18512496,
           18512595-18512687,18512773-18512958
          Length = 967

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +3

Query: 435 DPAGYERRDRYYVEAYKTLHNPT-HSRTTETLTVQDADTTLNTDSTETVSADTAGITVDG 611
           D A Y++RDRY  E  KT+   T  +        QD       +   TV+ D     +D 
Sbjct: 388 DAASYKKRDRYKEETGKTIQVATGRAMPGRRFHCQDIPDDYAKEEVRTVNEDHRMYEIDF 447

Query: 612 P 614
           P
Sbjct: 448 P 448


>07_01_0362 -
           2667031-2667090,2667182-2667426,2667749-2669471,
           2669578-2669921,2670544-2670667,2671350-2671599,
           2672486-2672571
          Length = 943

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 459 DRYYVEAYKTLHNPTHSRTTETLTVQDADTTLNTDSTETV 578
           D Y  E    LHNP+ S    ++   D   +   +STE+V
Sbjct: 570 DTYKAEGPSALHNPSASMRASSVIAMDTVHSAEENSTESV 609


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,880,854
Number of Sequences: 37544
Number of extensions: 365219
Number of successful extensions: 1003
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)