Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00802
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g65390.1 68414.m07420 disease resistance protein (TIR class),... 31 0.97
At1g49850.1 68414.m05589 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 29 2.2
At4g38340.1 68417.m05420 RWP-RK domain-containing protein simila... 28 6.8
At2g41850.1 68415.m05172 endo-polygalacturonase, putative simila... 28 6.8
At3g13890.1 68416.m01755 myb family transcription factor (MYB26)... 27 9.0
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 27 9.0
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 27 9.0
At1g68340.1 68414.m07806 expressed protein 27 9.0
>At1g65390.1 68414.m07420 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 411
Score = 30.7 bits (66), Expect = 0.97
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 101 DFNPWTWLSATNRNKSPSIMDYFF 172
D N WTWL N+N + S+M+ F
Sbjct: 273 DSNHWTWLPLPNQNSNESVMEIAF 296
>At1g49850.1 68414.m05589 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 492 HNPTHSRTTETLTVQDADTTLNTDSTETVSADTAGITVDG 611
H+P R+ VQ LNTDST+T + ++ + ++G
Sbjct: 69 HHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNG 108
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 29.5 bits (63), Expect = 2.2
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Frame = +3
Query: 6 SRPHA---HAAP*ISLCLYSSRSPLSPMPTNLAA*ISTLGHGY---RPRTETNL---PRS 158
SRPHA HA P + ++ RS +P+ ++L H Y + +TN P S
Sbjct: 340 SRPHAPRSHAPPTYAPRPHAPRS-YAPINSHLPRPNIPPYHSYTYSEQQNQTNQRPPPAS 398
Query: 159 WTISSHRPERPNNQTSIRPPIAGHLLPRKVRTHPDNDDPRRTYYVR 296
+T S+ + NQT+ RPP A + P + + N P +Y+R
Sbjct: 399 YTYSTQQ-----NQTNQRPPPASYTYP--TQQNQTNQRPPPAFYIR 437
>At4g38340.1 68417.m05420 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 767
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 150 PRSWTISS-HRPERPNNQTSIRPPIAGHLLPRKVR 251
P+ T+SS H +RP TS PP+ PRK +
Sbjct: 637 PQLLTLSSMHEDQRPVRVTSSLPPLPSATTPRKAK 671
>At2g41850.1 68415.m05172 endo-polygalacturonase, putative similar
to endo-polygalacturonase [Arabidopsis thaliana]
GI:2597824; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 433
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 582 ADTAGITVDGPKVTASTANIADETRSTDAGTASTV 686
A +G+TVDG K++ + + +T +GTAS +
Sbjct: 301 AFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNI 335
>At3g13890.1 68416.m01755 myb family transcription factor (MYB26)
similar to myb-related transcription factor GI:1167486
from [Lycopersicon esculentum]; contains myb DNA binding
domain: PF0049
Length = 367
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 145 ISLDHGLFLPTVPNAQ 192
IS DHGLFLPT N Q
Sbjct: 313 ISQDHGLFLPTTYNFQ 328
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 165 ISSHRPERPNNQTSIR-PPIAGHLLPRKVRTHPDNDDP 275
I S P + +S+ PP++GH++P R P N P
Sbjct: 330 IPSSAQSIPQHDSSMAIPPVSGHIMPPYGRFPPPNPQP 367
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 165 ISSHRPERPNNQTSIR-PPIAGHLLPRKVRTHPDNDDP 275
I S P + +S+ PP++GH++P R P N P
Sbjct: 317 IPSSAQSIPQHDSSMAIPPVSGHIMPPYGRFPPPNPQP 354
>At1g68340.1 68414.m07806 expressed protein
Length = 246
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 689 GDGARGTSVRGSRLVCYVRRRSSNFRPIYRN 597
GDG G+S G + + RRRSSNF ++N
Sbjct: 38 GDGGEGSSSGGDQRI---RRRSSNFESDHQN 65
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,912,948
Number of Sequences: 28952
Number of extensions: 278514
Number of successful extensions: 787
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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